Ankrd52 ankyrin repeat domain 52 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Ankrd52provided by RGD
Official Full Name: ankyrin repeat domain 52provided by RGD
Primary source: RGD:1307124
See related: EnsemblRapid:ENSRNOG00000030597 AllianceGenome:RGD:1307124
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1307124
Summary: Orthologous to human ANKRD52 (ankyrin repeat domain 52). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Adrenal (RPKM 64.2), Muscle (RPKM 60.2) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 7q11

Exon count:: 28

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	7	NC_086025.1 (1390730..1410139)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	7	NC_051342.1 (806829..820481)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	7	NC_005106.4 (2795888..2809538)

Chromosome 7 - NC_086025.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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General protein information

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Preferred Names: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001191875.1 → NP_001178804.1 serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C

Status: VALIDATED

Source sequence(s)

JAXUCZ010000007

Conserved Domains (4) summary

cd00204
Location:134 → 259

ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...

pfam12796
Location:177 → 269

Ank_2; Ankyrin repeats (3 copies)

pfam13637
Location:339 → 392

Ank_4; Ankyrin repeats (many copies)

sd00045
Location:108 → 137

ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086025.1 Reference GRCr8

Range

1390730..1410139

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_063263699.1 → XP_063119769.1 serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C isoform X1

UniProtKB/TrEMBL

D4ACT4

Related

ENSRNOP00000045243.6, ENSRNOT00000047462.7