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    LOB Lateral organ boundaries (LOB) domain family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836429, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LOB
    Official Full Name
    Lateral organ boundaries (LOB) domain family protein
    Primary source
    TAIR:AT5G63090
    Locus tag
    AT5G63090
    See related
    Araport:AT5G63090
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    LATERAL ORGAN BOUNDARIES; MDC12.5; MDC12_5
    Summary
    Involved in lateral organ development
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    Genomic context

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    See LOB in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (25308516..25311019, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Plant thionin family protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene histone deacetylase 6 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis lateral organ boundaries negatively regulates brassinosteroid accumulation to limit growth in organ boundaries. Bell EM, et al. Proc Natl Acad Sci U S A, 2012 Dec 18. PMID 23213252, Free PMC Article
    2. The lateral organ boundaries gene defines a novel, plant-specific gene family. Shuai B, et al. Plant Physiol, 2002 Jun. PMID 12068116, Free PMC Article
    3. LATERAL ORGAN BOUNDARIES defines a new family of DNA-binding transcription factors and can interact with specific bHLH proteins. Husbands A, et al. Nucleic Acids Res, 2007. PMID 17913740, Free PMC Article
    4. ZmMS1/ZmLBD30-orchestrated transcriptional regulatory networks precisely control pollen exine development. Hou Q, et al. Mol Plant, 2023 Aug 7. PMID 37501369
    5. A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. Smit ME, et al. Plant Cell, 2020 Feb. PMID 31806676, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Arabidopsis lateral organ boundaries negatively regulates brassinosteroid accumulation to limit growth in organ boundaries
      Title: Arabidopsis lateral organ boundaries negatively regulates brassinosteroid accumulation to limit growth in organ boundaries.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_125703.4
    NM_180921.2
    NM_180922.1
    NM_180923.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within organ boundary specification between lateral organs and the meristem IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Lateral organ boundaries (LOB) domain family protein
    NP_201114.1
    • LATERAL ORGAN BOUNDARIES (LOB); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 25 (TAIR:AT3G27650.1); Has 986 Blast hits to 981 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 986; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_851252.1
    • LATERAL ORGAN BOUNDARIES (LOB); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 25 (TAIR:AT3G27650.1); Has 986 Blast hits to 981 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 986; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_851253.1
    • LATERAL ORGAN BOUNDARIES (LOB); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 25 (TAIR:AT3G27650.1); Has 986 Blast hits to 981 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 986; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_851254.1
    • LATERAL ORGAN BOUNDARIES (LOB); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 25 (TAIR:AT3G27650.1); Has 986 Blast hits to 981 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 986; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25308516..25311019 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180921.2 → NP_851252.1  Lateral organ boundaries (LOB) domain family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851252.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B7XG58, Q549W6, Q8VWF4, Q9FML4
      UniProtKB/TrEMBL
      A0A178UKE6, A0A5S9YGK9, A0A654GEM6
      Conserved Domains (1) summary
      pfam03195
      Location:11 → 109
      LOB; Lateral organ boundaries (LOB) domain

    2. NM_125703.4 → NP_201114.1  Lateral organ boundaries (LOB) domain family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201114.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B7XG58, Q549W6, Q8VWF4, Q9FML4
      UniProtKB/TrEMBL
      A0A178UKE6, A0A5S9YGK9, A0A654GEM6
      Conserved Domains (1) summary
      pfam03195
      Location:11 → 109
      LOB; Lateral organ boundaries (LOB) domain

    3. NM_180922.1 → NP_851253.1  Lateral organ boundaries (LOB) domain family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851253.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B7XG58, Q549W6, Q8VWF4, Q9FML4
      UniProtKB/TrEMBL
      A0A178UKE6, A0A5S9YGK9, A0A654GEM6
      Conserved Domains (1) summary
      pfam03195
      Location:11 → 109
      LOB; Lateral organ boundaries (LOB) domain

    4. NM_180923.1 → NP_851254.1  Lateral organ boundaries (LOB) domain family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851254.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B7XG58, Q549W6, Q8VWF4, Q9FML4
      UniProtKB/TrEMBL
      A0A178UKE6, A0A5S9YGK9, A0A654GEM6
      Conserved Domains (1) summary
      pfam03195
      Location:11 → 109
      LOB; Lateral organ boundaries (LOB) domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FML4.1

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