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    6-phosphogluconate dehydrogenase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834169, updated on 18-Sep-2024

    Summary

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    Official Full Name
    6-phosphogluconate dehydrogenase family protein
    Primary source
    TAIR:AT5G41670
    Locus tag
    AT5G41670
    See related
    Araport:AT5G41670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MBK23.20; MBK23_20
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (16664674..16667390, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene tRNA-Met Neighboring gene Protein kinase superfamily protein Neighboring gene Mitochondrial outer membrane translocase complex, subunit Tom7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Defects in Peroxisomal 6-Phosphogluconate Dehydrogenase Isoform PGD2 Prevent Gametophytic Interaction in Arabidopsis thaliana. Hölscher C, et al. Plant Physiol, 2016 May. PMID 26941195, Free PMC Article
    2. Identification of sugar-modulated genes and evidence for in vivo sugar sensing in Arabidopsis. Gonzali S, et al. J Plant Res, 2006 Mar. PMID 16463203
    3. Identification of proteins that interact with catalytically active calcium-dependent protein kinases from Arabidopsis. Uno Y, et al. Mol Genet Genomics, 2009 Apr. PMID 19130088
    4. The Arabidopsis Proteins AtNHR2A and AtNHR2B Are Multi-Functional Proteins Integrating Plant Immunity With Other Biological Processes. Singh R, et al. Front Plant Sci, 2020. PMID 32194606, Free PMC Article
    5. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001344409.1
    NM_001344410.1
    NM_123531.3
    NM_180782.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables NADP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phosphogluconate 2-dehydrogenase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables phosphogluconate dehydrogenase (decarboxylating) activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within pentose-phosphate shunt, oxidative branch IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within response to fructose IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to glucose IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to sucrose IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast stroma HDA PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion HDA PubMed 
    located_in plasmodesma HDA PubMed 
    located_in plastid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in secretory vesicle HDA PubMed 

    General protein information

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    Preferred Names
    6-phosphogluconate dehydrogenase family protein
    NP_001318724.1
    • 6-phosphogluconate dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: response to fructose stimulus, response to cadmium ion, response to sucrose stimulus, response to glucose stimulus; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), 6-phosphogluconate dehydrogenase, decarboxylating (InterPro:IPR006113), 6-phosphogluconate dehydrogenase, C-terminal (InterPro:IPR006114), 6-phosphogluconate dehydrogenase (InterPro:IPR006183), NAD(P)-binding domain (InterPro:IPR016040), Fibritin/6-phosphogluconate dehydrogenase, C-terminal extension (InterPro:IPR012284); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT1G64190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    NP_851113.1
    • 6-phosphogluconate dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: response to fructose stimulus, response to cadmium ion, response to sucrose stimulus, response to glucose stimulus; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), 6-phosphogluconate dehydrogenase, decarboxylating (InterPro:IPR006113), 6-phosphogluconate dehydrogenase, C-terminal (InterPro:IPR006114), 6-phosphogluconate dehydrogenase (InterPro:IPR006183), NAD(P)-binding domain (InterPro:IPR016040), Fibritin/6-phosphogluconate dehydrogenase, C-terminal extension (InterPro:IPR012284); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT1G64190.1); Has 12747 Blast hits to 12577 proteins in 2621 species: Archae - 86; Bacteria - 8556; Metazoa - 692; Fungi - 242; Plants - 329; Viruses - 4; Other Eukaryotes - 2838 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      16664674..16667390 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344409.1 → NP_001318724.1  6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LG34, Q9FFR3
      UniProtKB/TrEMBL
      A0A178UQL8, A0A5S9Y9Z1, A0A654G6Z8
      Conserved Domains (1) summary
      PLN02350
      Location:1 → 487
      PLN02350; phosphogluconate dehydrogenase (decarboxylating)

    2. NM_001344410.1 → NP_001332670.1  6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LG34, Q9FFR3
      UniProtKB/TrEMBL
      A0A178UQL8, A0A5S9Y9Z1, A0A654G6Z8
      Conserved Domains (1) summary
      PLN02350
      Location:1 → 487
      PLN02350; phosphogluconate dehydrogenase (decarboxylating)

    3. NM_180782.3 → NP_851113.1  6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851113.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LG34, Q9FFR3
      UniProtKB/TrEMBL
      A0A178UQL8, A0A5S9Y9Z1, A0A654G6Z8
      Conserved Domains (1) summary
      PLN02350
      Location:1 → 487
      PLN02350; phosphogluconate dehydrogenase (decarboxylating)

    4. NM_123531.3 → NP_198982.1  6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198982.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LG34, Q9FFR3
      UniProtKB/TrEMBL
      A0A178UQL8, A0A5S9Y9Z1, A0A654G6Z8
      Conserved Domains (1) summary
      PLN02350
      Location:1 → 487
      PLN02350; phosphogluconate dehydrogenase (decarboxylating)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FFR3.1

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