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    UBQ14 Ubiquitin family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828148, updated on 18-Sep-2024

    Summary

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    Official Symbol
    UBQ14
    Official Full Name
    Ubiquitin family protein
    Primary source
    TAIR:AT4G02890
    Locus tag
    AT4G02890
    See related
    Araport:AT4G02890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T5J8.21; T5J8_21
    Summary
    Polyubiquitin gene containing 4 ubiquitin repeats.
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    Genomic context

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    See UBQ14 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (1278530..1280166, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ELKS/Rab6-interacting/CAST family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ERD (early-responsive to dehydration stress) family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis mitochondrial membrane-bound ubiquitin protease UBP27 contributes to mitochondrial morphogenesis. Pan R, et al. Plant J, 2014 Jun. PMID 24707813
    2. Expansion and diversification of BTL ring-H2 ubiquitin ligases in angiosperms: putative Rabring7/BCA2 orthologs. Aguilar-Hernández V, et al. PLoS One, 2013. PMID 23951330, Free PMC Article
    3. Structure and evolution of genes encoding polyubiquitin and ubiquitin-like proteins in Arabidopsis thaliana ecotype Columbia. Callis J, et al. Genetics, 1995 Feb. PMID 7713442, Free PMC Article
    4. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    5. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001125450.2
    NM_116523.3
    NM_178960.2
    NM_178961.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within ubiquitin-dependent protein catabolic process ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    Ubiquitin family protein
    NP_001118922.1
    • UBQ14; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: polyubiquitin 10 (TAIR:AT4G05320.6); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_567247.2
    • UBQ14; INVOLVED IN: protein modification process, ubiquitin-dependent protein catabolic process; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: polyubiquitin 10 (TAIR:AT4G05320.4); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_849291.1
    • UBQ14; INVOLVED IN: protein modification process, ubiquitin-dependent protein catabolic process; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: polyubiquitin 10 (TAIR:AT4G05320.4); Has 21375 Blast hits to 7210 proteins in 724 species: Archae - 0; Bacteria - 57; Metazoa - 10015; Fungi - 2460; Plants - 4438; Viruses - 488; Other Eukaryotes - 3917 (source: NCBI BLink).
    NP_849292.1
    • UBQ14; INVOLVED IN: protein modification process, ubiquitin-dependent protein catabolic process; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: polyubiquitin 10 (TAIR:AT4G05320.6); Has 26633 Blast hits to 7217 proteins in 726 species: Archae - 0; Bacteria - 80; Metazoa - 12516; Fungi - 3023; Plants - 5428; Viruses - 651; Other Eukaryotes - 4935 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      1278530..1280166 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001125450.2 → NP_001118922.1  Ubiquitin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118922.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DFN7, Q3E7T8
      UniProtKB/TrEMBL
      A0A178V886, A0A384KF74, J7FN14, O49976
      Conserved Domains (1) summary
      cd01803
      Location:77 → 152
      Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin

    2. NM_178960.2 → NP_849291.1  Ubiquitin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849291.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P0CH33
      UniProtKB/TrEMBL
      Q8H0Y0, Q8LBW0
      Conserved Domains (1) summary
      cd01803
      Location:77 → 152
      Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin

    3. NM_178961.1 → NP_849292.1  Ubiquitin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849292.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DFN7, Q3E7T8
      UniProtKB/TrEMBL
      A0A178V886, A0A384KF74, J7FN14, O49976
      Conserved Domains (1) summary
      cd01803
      Location:77 → 152
      Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin

    4. NM_116523.3 → NP_567247.2  Ubiquitin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567247.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P0CH33
      UniProtKB/TrEMBL
      Q8H0Y0, Q8LBW0
      Conserved Domains (1) summary
      cd01803
      Location:77 → 152
      Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0CH33.1
    Q3E7T8.2

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    Research Materials