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    Double-stranded RNA-binding domain (DsRBD)-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828061, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Double-stranded RNA-binding domain (DsRBD)-containing protein
    Primary source
    TAIR:AT4G00420
    Locus tag
    AT4G00420
    See related
    Araport:AT4G00420
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    A_IG005I10.3; A_IG005I10_3; F5I10.3; F5I10_3
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (181267..184469, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene methyl-CPG-binding domain 3 Neighboring gene plasma membrane intrinsic protein 1;4 Neighboring gene GPI-anchored adhesin-like protein, putative (DUF3741)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001125430.1
    NM_001340244.1
    NM_001340246.1
    NM_178944.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Double-stranded RNA-binding domain (DsRBD)-containing protein
    NP_001118902.1
    • Double-stranded RNA-binding domain (DsRBD)-containing protein; FUNCTIONS IN: double-stranded RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159); BEST Arabidopsis thaliana protein match is: RNAse THREE-like protein 1 (TAIR:AT1G80650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001319830.1
    • Double-stranded RNA-binding domain (DsRBD)-containing protein; FUNCTIONS IN: double-stranded RNA binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: RNAse THREE-like protein 1 (TAIR:AT1G80650.1); Has 64 Blast hits to 64 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_849275.1
    • Double-stranded RNA-binding domain (DsRBD)-containing protein; FUNCTIONS IN: double-stranded RNA binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: RNAse THREE-like protein 1 (TAIR:AT1G80650.1); Has 72 Blast hits to 72 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      181267..184469 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340245.1 → NP_001328017.1  Double-stranded RNA-binding domain (DsRBD)-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V2L4, F4JHB3

    2. NM_178944.3 → NP_849275.1  Double-stranded RNA-binding domain (DsRBD)-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849275.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V2L4, F4JHB3
      Conserved Domains (1) summary
      pfam00035
      Location:85 → 126
      dsrm; Double-stranded RNA binding motif

    3. NM_001340246.1 → NP_001328016.1  Double-stranded RNA-binding domain (DsRBD)-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V2L4, F4JHB3

    4. NM_001125430.1 → NP_001118902.1  Double-stranded RNA-binding domain (DsRBD)-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118902.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V2L4, B3H7E2
      Conserved Domains (1) summary
      pfam00035
      Location:63 → 104
      dsrm; Double-stranded RNA binding motif

    5. NM_001340244.1 → NP_001319830.1  Double-stranded RNA-binding domain (DsRBD)-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V4H5, Q84JN8
    Nucleotide Protein
    Heading Accession and Version

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