U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834795, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    uncharacterized protein
    Primary source
    TAIR:AT5G47455
    Locus tag
    AT5G47455
    See related
    Araport:AT5G47455
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (19250659..19252491)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene tonoplast intrinsic protein 2;3 Neighboring gene miscRNA Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene Nodulin MtN21 /EamA-like transporter family protein Neighboring gene RGPR-like protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. In-depth temporal transcriptome profiling reveals a crucial developmental switch with roles for RNA processing and organelle metabolism that are essential for germination in Arabidopsis. Narsai R, et al. Plant Physiol, 2011 Nov. PMID 21908688, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001161292.1
    NM_001344721.1
    NM_001344722.1
    NM_001344724.1
    NM_124118.3
    NM_180815.3
    NM_180816.2
    NM_180817.3
    NM_203168.3
    NM_203169.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion HDA PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein
    NP_001154764.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.1); Has 147 Blast hits to 147 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_568683.2
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.2); Has 125 Blast hits to 125 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_851146.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.1); Has 147 Blast hits to 147 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_851147.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.2); Has 132 Blast hits to 132 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_851148.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.2); Has 138 Blast hits to 138 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_974897.2
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.2); Has 132 Blast hits to 132 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_974898.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19250659..19252491
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344723.1 → NP_001330801.1  uncharacterized protein AT5G47455 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BBY9, A0A5S9YBW5, A0A654G8W3

    2. NM_180816.2 → NP_851147.1  uncharacterized protein AT5G47455 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851147.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JX59, Q8LC27

    3. NM_001344724.1 → NP_001330800.1  uncharacterized protein AT5G47455 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BBY9, A0A5S9YBW5, A0A654G8W3

    4. NM_203168.3 → NP_974897.2  uncharacterized protein AT5G47455 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974897.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JX59, Q8LC27

    5. NM_001344721.1 → NP_001330803.1  uncharacterized protein AT5G47455 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BBY9, A0A5S9YBW5, A0A654G8W3

    6. NM_001161292.1 → NP_001154764.1  uncharacterized protein AT5G47455 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154764.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UFY5, Q84MD3

    7. NM_001344722.1 → NP_001330802.1  uncharacterized protein AT5G47455 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UFY5, Q84MD3

    8. NM_203169.2 → NP_974898.1  uncharacterized protein AT5G47455 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974898.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UFY5, Q84MD3

    9. NM_180817.3 → NP_851148.1  uncharacterized protein AT5G47455 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851148.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UFY5, Q8GYB2

    10. NM_180815.3 → NP_851146.1  uncharacterized protein AT5G47455 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851146.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UFY5, Q84MD3

    11. NM_124118.3 → NP_568683.2  uncharacterized protein AT5G47455 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568683.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JX57, Q8LC27
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.