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    ARM repeat superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831950, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ARM repeat superfamily protein
    Primary source
    TAIR:AT5G18320
    Locus tag
    AT5G18320
    See related
    Araport:AT5G18320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20L16.40; F20L16_40
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (6064170..6066284, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Aquaporin-like superfamily protein Neighboring gene NAC domain containing protein 88 Neighboring gene ubiquitin hydrolase Neighboring gene ARM repeat superfamily protein Neighboring gene ARM repeat superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Overexpression of Arabidopsis ubiquitin ligase AtPUB46 enhances tolerance to drought and oxidative stress. Adler G, et al. Plant Sci, 2018 Nov. PMID 30348322
    2. The Arabidopsis paralogs, PUB46 and PUB48, encoding U-box E3 ubiquitin ligases, are essential for plant response to drought stress. Adler G, et al. BMC Plant Biol, 2017 Jan 11. PMID 28077082, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to water deprivation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ARM repeat superfamily protein
    NP_197333.2
    • ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G18340.1); Has 2654 Blast hits to 2388 proteins in 199 species: Archae - 0; Bacteria - 18; Metazoa - 94; Fungi - 232; Plants - 2125; Viruses - 3; Other Eukaryotes - 182 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6064170..6066284 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121837.3 → NP_197333.2  ARM repeat superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197333.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q3E9F7
      UniProtKB/TrEMBL
      A0A178UI35, A0A5S9Y7H3
      Conserved Domains (3) summary
      smart00504
      Location:75 → 137
      Ubox; Modified RING finger domain
      cd00020
      Location:161 → 281
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      sd00043
      Location:249 → 279
      ARM; armadillo repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3E9F7.1

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