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    Ribosomal protein S21 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836450, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribosomal protein S21 family protein
    Primary source
    TAIR:AT5G63300
    Locus tag
    AT5G63300
    See related
    Araport:AT5G63300
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MDC12.27; MDC12_27
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (25371091..25372017)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene C2H2-like zinc finger protein Neighboring gene Radical SAM superfamily protein Neighboring gene ncRNA Neighboring gene nucleoside diphosphate kinase 2 Neighboring gene ncRNA Neighboring gene nuclear protein X1 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001126011.2
    NM_125725.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ribosomal protein S21 family protein
    NP_001119483.1
    • Ribosomal protein S21 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: Ribosomal protein S21 (InterPro:IPR001911); BEST Arabidopsis thaliana protein match is: Ribosomal protein S21 family protein (TAIR:AT3G27160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_201135.2
    • Ribosomal protein S21 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: Ribosomal protein S21 (InterPro:IPR001911); BEST Arabidopsis thaliana protein match is: Ribosomal protein S21 family protein (TAIR:AT3G27160.1); Has 1443 Blast hits to 1443 proteins in 604 species: Archae - 0; Bacteria - 1229; Metazoa - 17; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25371091..25372017
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125725.4 → NP_201135.2  Ribosomal protein S21 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201135.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654GDY9, Q500W1, Q683J1
      Conserved Domains (1) summary
      PRK00270
      Location:82 → 140
      rpsU; 30S ribosomal protein S21; Reviewed

    2. NM_001126011.2 → NP_001119483.1  Ribosomal protein S21 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119483.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UGS8, Q9FMJ3
      Conserved Domains (1) summary
      PRK00270
      Location:82 → 139
      rpsU; 30S ribosomal protein S21; Reviewed
    Nucleotide Protein
    Heading Accession and Version

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