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    XTH25 xyloglucan endotransglucosylase/hydrolase 25 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835859, updated on 18-Sep-2024

    Summary

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    Official Symbol
    XTH25
    Official Full Name
    xyloglucan endotransglucosylase/hydrolase 25
    Primary source
    TAIR:AT5G57550
    Locus tag
    AT5G57550
    See related
    Araport:AT5G57550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MUA2.12; MUA2_12; XTR3; xyloglucan endotransglucosylase/hydrolase 25; xyloglucan endotransglycosylase 3
    Summary
    xyloglucan endotransglycosylase-related protein (XTR3)
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    Genomic context

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    See XTH25 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (23304782..23306440, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene xyloglucan endotransglucosylase/hydrolase 13 Neighboring gene Xyloglucan endotransglucosylase/hydrolase family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A comprehensive expression analysis of all members of a gene family encoding cell-wall enzymes allowed us to predict cis-regulatory regions involved in cell-wall construction in specific organs of Arabidopsis. Yokoyama R, et al. Plant Cell Physiol, 2001 Oct. PMID 11673616
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_125136.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables polysaccharide binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables xyloglucan:xyloglucosyl transferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within plant-type cell wall biogenesis ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    involved_in xyloglucan metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    xyloglucan endotransglucosylase/hydrolase 25
    NP_568859.2
    • xyloglucan endotransglucosylase/hydrolase 25 (XTH25); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: plant-type cell wall biogenesis; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglycosylase 6 (TAIR:AT4G25810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23304782..23306440 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125136.4 → NP_568859.2  xyloglucan endotransglucosylase/hydrolase 25 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568859.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q38907, Q9SEB0
      UniProtKB/TrEMBL
      A0A178UD61, A0A5S9YEX7
      Conserved Domains (1) summary
      cd02176
      Location:27 → 282
      GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q38907.2

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