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    Carbohydrate-binding X8 domain superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836445, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Carbohydrate-binding X8 domain superfamily protein
    Primary source
    TAIR:AT5G63250
    Locus tag
    AT5G63250
    See related
    Araport:AT5G63250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MDC12.22; MDC12_22
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (25360121..25360695, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Carbohydrate-binding X8 domain superfamily protein Neighboring gene Carbohydrate-binding X8 domain superfamily protein Neighboring gene Zinc finger C-x8-C-x5-C-x3-H type family protein Neighboring gene RPM1-interacting protein 4 (RIN4) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Carbohydrate-binding X8 domain superfamily protein
    NP_201130.1
    • Carbohydrate-binding X8 domain superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: Carbohydrate-binding X8 domain superfamily protein (TAIR:AT5G63240.1); Has 1382 Blast hits to 1334 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 13; Plants - 1368; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25360121..25360695 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125720.3 → NP_201130.1  Carbohydrate-binding X8 domain superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201130.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UQJ1, A0A5S9YGU3, A0A654GDK3, Q9FMJ8
      Conserved Domains (1) summary
      smart00768
      Location:42 → 128
      X8; Possibly involved in carbohydrate binding
    Nucleotide Protein
    Heading Accession and Version

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