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    transmembrane protein, putative (DUF679) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834650, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transmembrane protein, putative (DUF679)
    Primary source
    TAIR:AT5G46090
    Locus tag
    AT5G46090
    See related
    Araport:AT5G46090
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MCL19.14; MCL19_14
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (18693485..18694129)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Guanylate-binding family protein Neighboring gene Protein kinase superfamily protein Neighboring gene uncharacterized protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene Glucose-6-phosphate/phosphate translocator-like protein Neighboring gene tRNA-Pro

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression, localisation and phylogeny of a novel family of plant-specific membrane proteins. Kasaras A, et al. Plant Biol (Stuttg), 2010 Sep. PMID 20712629
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_123977.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in endomembrane system organization ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transmembrane protein, putative (DUF679)
    NP_199421.1
    • Protein of unknown function (DUF679); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF679 (InterPro:IPR007770); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF679) (TAIR:AT4G18425.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      18693485..18694129
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123977.1 → NP_199421.1  transmembrane protein, putative (DUF679) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199421.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FNL3
      UniProtKB/TrEMBL
      A0A5S9YBR2
      Conserved Domains (1) summary
      pfam05078
      Location:47 → 209
      DUF679; Protein of unknown function (DUF679)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FNL3.1

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