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    HDG9 homeodomain GLABROUS 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831598, updated on 18-Sep-2024

    Summary

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    Official Symbol
    HDG9
    Official Full Name
    homeodomain GLABROUS 9
    Primary source
    TAIR:AT5G17320
    Locus tag
    AT5G17320
    See related
    Araport:AT5G17320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    homeodomain GLABROUS 9; MKP11.28; MKP11_28
    Summary
    Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.
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    Genomic context

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    See HDG9 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Sequence:
    Chromosome: 5; NC_003076.8 (5703139..5707637, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Homeodomain-like superfamily protein Neighboring gene uncharacterized protein Neighboring gene UDP-glucose pyrophosphorylase 2 Neighboring gene glutamate decarboxylase Neighboring gene Putative membrane lipoprotein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of the class IV homeodomain-Leucine Zipper gene family in Arabidopsis. Nakamura M, et al. Plant Physiol, 2006 Aug. PMID 16778018, Free PMC Article
    2. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    homeodomain GLABROUS 9
    NP_197234.1
    • homeodomain GLABROUS 9 (HDG9); FUNCTIONS IN: sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: tapetum, male gametophyte, anther, female gametophyte; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeodomain GLABROUS 10 (TAIR:AT1G34650.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      5703139..5707637 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121738.2 → NP_197234.1  homeodomain GLABROUS 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197234.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FFI0
      UniProtKB/TrEMBL
      A0A5S9Y5R1, A0A654G1Z4, A0A7G2F857
      Conserved Domains (2) summary
      cd08875
      Location:239 → 460
      START_ArGLABRA2_like; C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins
      pfam00046
      Location:30 → 82
      Homeobox; Homeobox domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FFI0.1

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