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    EMB1789 CCCH-type zinc finger family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835795, updated on 18-Sep-2024

    Summary

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    Official Symbol
    EMB1789
    Official Full Name
    CCCH-type zinc finger family protein
    Primary source
    TAIR:AT5G56930
    Locus tag
    AT5G56930
    See related
    Araport:AT5G56930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    embryo defective 1789; MHM17.4; MHM17_4
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    Genomic context

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    See EMB1789 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (23027658..23030639, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Proteinase inhibitor I25, cystatin, conserved region Neighboring gene Cystatin/monellin superfamily protein Neighboring gene Ribosomal protein S16 family protein Neighboring gene nucleosome assembly protein 1;3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_125075.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy NAS
    Non-traceable Author Statement
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CCCH-type zinc finger family protein
    NP_200503.1
    • embryo defective 1789 (emb1789); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: embryo development ending in seed dormancy; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 4013 Blast hits to 1845 proteins in 273 species: Archae - 0; Bacteria - 114; Metazoa - 1017; Fungi - 647; Plants - 283; Viruses - 3; Other Eukaryotes - 1949 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23027658..23030639 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125075.3 → NP_200503.1  CCCH-type zinc finger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200503.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LTS7
      UniProtKB/TrEMBL
      A0A178UTA2, A0A5S9YEV6, A0A654GC49
      Conserved Domains (2) summary
      COG5084
      Location:345 → 466
      YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
      pfam18044
      Location:356 → 375
      zf-CCCH_4; CCCH-type zinc finger
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LTS7.1

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