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    UPSTREAM OF FLC protein (DUF966) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830879, updated on 18-Sep-2024

    Summary

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    Official Full Name
    UPSTREAM OF FLC protein (DUF966)
    Primary source
    TAIR:AT5G10150
    Locus tag
    AT5G10150
    See related
    Araport:AT5G10150
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T31P16.140; T31P16_140
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (3181938..3184110, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Pollen Ole e 1 allergen and extensin family protein Neighboring gene ncRNA Neighboring gene K-box region and MADS-box transcription factor family protein Neighboring gene Thioesterase superfamily protein Neighboring gene myo-inositol-1-phosphate synthase 3 Neighboring gene slufate transporter 2;1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A SOSEKI-based coordinate system interprets global polarity cues in Arabidopsis. Yoshida S, et al. Nat Plants, 2019 Feb. PMID 30737509, Free PMC Article
    2. DIX Domain Polymerization Drives Assembly of Plant Cell Polarity Complexes. van Dop M, et al. Cell, 2020 Feb 6. PMID 32004461, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001343090.1
    NM_001343091.1
    NM_001343092.1
    NM_121053.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in plant organ morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in protein polymerization IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in regulation of cell division IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of root morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in specification of plant organ axis polarity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in basal plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    UPSTREAM OF FLC protein (DUF966)
    NP_196577.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF966 (InterPro:IPR010369), Uncharacterised conserved protein UCP031043 (InterPro:IPR021182); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF966) (TAIR:AT5G59790.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3181938..3184110 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121053.5 → NP_196577.1  UPSTREAM OF FLC protein (DUF966) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196577.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LX14
      UniProtKB/TrEMBL
      A0A178UKM0, A0A5S9Y3Q7, A0A654G017
      Conserved Domains (1) summary
      pfam06136
      Location:46 → 377
      DUF966; Domain of unknown function (DUF966)

    2. NM_001343090.1 → NP_001330906.1  UPSTREAM OF FLC protein (DUF966) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UKM0, A0A1P8BC94, A0A5S9Y3Q7

    3. NM_001343092.1 → NP_001330904.1  UPSTREAM OF FLC protein (DUF966) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UKM0, A0A1P8BC74

    4. NM_001343091.1 → NP_001330905.1  UPSTREAM OF FLC protein (DUF966) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BC89
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LX14.1

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