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    Surfeit locus protein 2 (SURF2) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834055, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Surfeit locus protein 2 (SURF2)
    Primary source
    TAIR:AT5G40570
    Locus tag
    AT5G40570
    See related
    Araport:AT5G40570
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MNF13.9; MNF13_9
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (16246760..16248390)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene SGF29 tudor-like domain-containing protein Neighboring gene protease Do-like protein Neighboring gene 20S proteasome beta subunit PBB2 Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene bromodomain testis-specific protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001085217.1
    NM_123421.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Surfeit locus protein 2 (SURF2)
    NP_001078686.1
    • Surfeit locus protein 2 (SURF2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Surfeit locus 2 (InterPro:IPR008833); BEST Arabidopsis thaliana protein match is: Surfeit locus protein 2 (SURF2) (TAIR:AT5G14440.1); Has 83 Blast hits to 79 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 37; Fungi - 2; Plants - 33; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
    NP_198873.2
    • Surfeit locus protein 2 (SURF2); CONTAINS InterPro DOMAIN/s: Surfeit locus 2 (InterPro:IPR008833); BEST Arabidopsis thaliana protein match is: Surfeit locus protein 2 (SURF2) (TAIR:AT5G14440.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      16246760..16248390
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123421.4 → NP_198873.2  Surfeit locus protein 2 (SURF2) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198873.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YC16, A0A654G6R5, Q9FM40
      Conserved Domains (1) summary
      pfam05477
      Location:6 → 199
      SURF2; Surfeit locus protein 2 (SURF2)

    2. NM_001085217.1 → NP_001078686.1  Surfeit locus protein 2 (SURF2) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078686.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G6R5, A8MRG2
      Conserved Domains (1) summary
      pfam05477
      Location:6 → 202
      SURF2; Surfeit locus protein 2 (SURF2)
    Nucleotide Protein
    Heading Accession and Version

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