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    ubiquitin carboxyl-terminal hydrolase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832265, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ubiquitin carboxyl-terminal hydrolase
    Primary source
    TAIR:AT5G22040
    Locus tag
    AT5G22040
    See related
    Araport:AT5G22040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (7296915..7299313, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Calcium-dependent phosphotriesterase superfamily protein Neighboring gene ubiquitin-specific protease 8 Neighboring gene miscRNA Neighboring gene Protein kinase superfamily protein Neighboring gene DNAJ homologue 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001125787.2
    NM_001203429.1
    NM_147886.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ubiquitin carboxyl-terminal hydrolase
    NP_001119259.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001190358.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.
    NP_680191.1
    • unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      7296915..7299313 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001125787.2 → NP_001119259.1  ubiquitin carboxyl-terminal hydrolase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119259.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y637, A0A654G3G0, Q9C584
      Conserved Domains (1) summary
      COG0419
      Location:95 → 197
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]

    2. NM_147886.4 → NP_680191.1  ubiquitin carboxyl-terminal hydrolase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_680191.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y637, A0A654G3G0, Q9C584
      Conserved Domains (1) summary
      COG0419
      Location:95 → 197
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]

    3. NM_001203429.1 → NP_001190358.1  ubiquitin carboxyl-terminal hydrolase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190358.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y637, A0A654G3G0, Q9C584
      Conserved Domains (1) summary
      COG0419
      Location:95 → 197
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    Nucleotide Protein
    Heading Accession and Version

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