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    Restriction endonuclease, type II-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833973, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Restriction endonuclease, type II-like superfamily protein
    Primary source
    TAIR:AT5G39770
    Locus tag
    AT5G39770
    See related
    Araport:AT5G39770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MKM21.10; MKM21_10
    Summary
    Represents a non-function pseudogene homologous to AtMSU81 (At4g30870).
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    32
    Sequence:
    Chromosome: 5; NC_003076.8 (15919241..15927549, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene AGAMOUS-like 81 Neighboring gene homeobox protein 23 Neighboring gene Gag-Pol polyprotein/retrotransposon Neighboring gene hypothetical protein (DUF1666) Neighboring gene PROTEIN TARGETING TO STARCH (PTST)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Restriction endonuclease, type II-like superfamily protein
    NP_198793.4
    • Restriction endonuclease, type II-like superfamily protein; FUNCTIONS IN: DNA binding, endonuclease activity, nucleic acid binding, nuclease activity; INVOLVED IN: DNA repair, DNA metabolic process; CONTAINS InterPro DOMAIN/s: ERCC4 domain (InterPro:IPR006166), Restriction endonuclease, type II-like (InterPro:IPR011335); BEST Arabidopsis thaliana protein match is: Restriction endonuclease, type II-like superfamily protein (TAIR:AT4G30870.1); Has 484 Blast hits to 435 proteins in 184 species: Archae - 0; Bacteria - 8; Metazoa - 125; Fungi - 136; Plants - 59; Viruses - 0; Other Eukaryotes - 156 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      15919241..15927549 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123339.4 → NP_198793.4  Restriction endonuclease, type II-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198793.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G703, F4KFU8
      Conserved Domains (1) summary
      pfam02732
      Location:1043 → 1129
      ERCC4; ERCC4 domain
    Nucleotide Protein
    Heading Accession and Version

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