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    F-box/FBD-like domains containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833845, updated on 18-Sep-2024

    Summary

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    Official Full Name
    F-box/FBD-like domains containing protein
    Primary source
    TAIR:AT5G38565
    Locus tag
    AT5G38565
    See related
    Araport:AT5G38565
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (15444310..15446297, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Mannose-binding lectin superfamily protein Neighboring gene Protein kinase superfamily protein Neighboring gene F-box/RNI-like superfamily protein Neighboring gene FBD-like domain family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_148060.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    F-box/FBD-like domains containing protein
    NP_680365.2
    • F-box/FBD-like domains containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT5G38570.1); Has 1399 Blast hits to 1333 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1399; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      15444310..15446297 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_148060.3 → NP_680365.2  F-box/FBD-like domains containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_680365.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WVF3, Q3E8L3
      UniProtKB/TrEMBL
      A0A654G6B7
      Conserved Domains (3) summary
      sd00032
      Location:129 → 151
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:2 → 43
      F-box; F-box domain
      pfam08387
      Location:266 → 311
      FBD; FBD
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3E8L3.2

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