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    NAC105 NAC domain containing protein 105 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836762, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NAC105
    Official Full Name
    NAC domain containing protein 105
    Primary source
    TAIR:AT5G66300
    Locus tag
    AT5G66300
    See related
    Araport:AT5G66300
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ANAC105; Arabidopsis NAC domain containing protein 105; K1L20.8; K1L20_8; NAC domain containing protein 105; VASCULAR-RELATED NAC-DOMAIN 3; VND3
    Summary
    Encodes a NAC-domain transcription factor. Expressed in the vascular tissue.
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    Genomic context

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    See NAC105 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (26479766..26481528, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Zinc finger C-x8-C-x5-C-x3-H type family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene GDP-D-mannose 4,6-dehydratase 1 Neighboring gene ATP binding microtubule motor family protein Neighboring gene GATA transcription factor 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation. Tan TT, et al. Plant Physiol, 2018 Jan. PMID 29133368, Free PMC Article
    2. Arabidopsis NAC domain proteins, VND1 to VND5, are transcriptional regulators of secondary wall biosynthesis in vessels. Zhou J, et al. PLoS One, 2014. PMID 25148240, Free PMC Article
    3. Vascular-related NAC-DOMAIN7 is involved in the differentiation of all types of xylem vessels in Arabidopsis roots and shoots. Yamaguchi M, et al. Plant J, 2008 Aug. PMID 18445131
    4. VND-INTERACTING2, a NAC domain transcription factor, negatively regulates xylem vessel formation in Arabidopsis. Yamaguchi M, et al. Plant Cell, 2010 Apr. PMID 20388856, Free PMC Article
    5. SND1, a NAC domain transcription factor, is a key regulator of secondary wall synthesis in fibers of Arabidopsis. Zhong R, et al. Plant Cell, 2006 Nov. PMID 17114348, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_126028.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables sequence-specific DNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within positive regulation of secondary cell wall biogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within xylem vessel member cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in xylem vessel member cell differentiation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    NAC domain containing protein 105
    NP_201431.1
    • NAC domain containing protein 105 (NAC105); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 76 (TAIR:AT4G36160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      26479766..26481528 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126028.3 → NP_201431.1  NAC domain containing protein 105 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201431.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FH59
      UniProtKB/TrEMBL
      A0A5S9YHH0, A0A654GEJ4
      Conserved Domains (1) summary
      pfam02365
      Location:13 → 138
      NAM; No apical meristem (NAM) protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FH59.1

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