U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ATM2 myosin 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835516, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ATM2
    Official Full Name
    myosin 2
    Primary source
    TAIR:AT5G54280
    Locus tag
    AT5G54280
    See related
    Araport:AT5G54280
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA MYOSIN 1; ARABIDOPSIS THALIANA MYOSIN 4; ATM4; ATMYOS1; MDK4.10; MDK4_10; myosin 2; MYOSIN 4
    Summary
    Type VII myosin gene
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ATM2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    23
    Sequence:
    Chromosome: 5; NC_003076.8 (22039383..22046358, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene cyclic nucleotide-gated cation channel 4 Neighboring gene DNA repair and meiosis protein (Mre11) Neighboring gene light-harvesting chlorophyll B-binding protein 3 Neighboring gene cytochrome c biogenesis protein family Neighboring gene cotton fiber-like protein (DUF761) Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The Arabidopsis class VIII myosin ATM2 is involved in endocytosis. Sattarzadeh A, et al. Cell Motil Cytoskeleton, 2008 Jun. PMID 18393384
    2. Functional characterization of AtATM1, AtATM2, and AtATM3, a subfamily of Arabidopsis half-molecule ATP-binding cassette transporters implicated in iron homeostasis. Chen S, et al. J Biol Chem, 2007 Jul 20. PMID 17517886
    3. Analysis of the myosins encoded in the recently completed Arabidopsis thaliana genome sequence. Reddy AS, et al. Genome Biol, 2001. PMID 11516337, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. results indicate the class VIII myosin ATM2 binds to early endosomes and mediates transportation through the endocytic pathway
      Title: The Arabidopsis class VIII myosin ATM2 is involved in endocytosis.
    2. AtATM1, AtATM2, and AtATM3 are a subfamily of Arabidopsis half-molecule ATP-binding cassette transporters implicated in iron homeostasis
      Title: Functional characterization of AtATM1, AtATM2, and AtATM3, a subfamily of Arabidopsis half-molecule ATP-binding cassette transporters implicated in iron homeostasis.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help
    NM_001085286.2
    NM_124808.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cytoskeletal motor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within actin filament-based movement TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    part_of myosin complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    myosin 2
    NP_001078755.1
    • myosin 2 (ATM2); FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: plasma membrane, myosin complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G27370.1); Has 6721 Blast hits to 6298 proteins in 733 species: Archae - 3; Bacteria - 9; Metazoa - 4442; Fungi - 716; Plants - 447; Viruses - 0; Other Eukaryotes - 1104 (source: NCBI BLink).
    NP_568806.3
    • myosin 2 (ATM2); FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: plasma membrane, myosin complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G27370.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22039383..22046358 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124808.4 → NP_568806.3  myosin 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568806.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YEL7, A0A7G2FMH5, F4K0A7
      Conserved Domains (2) summary
      smart00242
      Location:19 → 689
      MYSc; Myosin. Large ATPases
      cd01383
      Location:38 → 677
      MYSc_Myo8; class VIII myosin, motor domain

    2. NM_001085286.2 → NP_001078755.1  myosin 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078755.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K0A6, Q0WNH0, Q39157, Q9FL71
      UniProtKB/TrEMBL
      A0A5S9YEL7
      Conserved Domains (2) summary
      smart00242
      Location:208 → 879
      MYSc; Myosin. Large ATPases
      cd01383
      Location:227 → 867
      MYSc_Myo8; class VIII myosin, motor domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4K0A6.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools