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    aminopeptidase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831242, updated on 18-Sep-2024

    Summary

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    Official Full Name
    aminopeptidase
    Primary source
    TAIR:AT5G13940
    Locus tag
    AT5G13940
    See related
    Araport:AT5G13940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MAC12.10; MAC12_10
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    23
    Sequence:
    Chromosome: 5; NC_003076.8 (4490263..4495753, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene GRF zinc finger / Zinc knuckle protein Neighboring gene Chalcone and stilbene synthase family protein Neighboring gene ncRNA Neighboring gene nuclear factor kappa-B-binding protein Neighboring gene histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like protein Neighboring gene midasin-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001343301.1
    NM_121397.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    aminopeptidase
    NP_196898.5
    • aminopeptidases; FUNCTIONS IN: aminopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Peptidase M17, leucyl aminopeptidase, C-terminal (InterPro:IPR000819), Protein of unknown function DUF3754 (InterPro:IPR022227); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3754) (TAIR:AT3G19340.1); Has 538 Blast hits to 503 proteins in 70 species: Archae - 0; Bacteria - 76; Metazoa - 8; Fungi - 0; Plants - 425; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4490263..4495753 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121397.6 → NP_196898.5  aminopeptidase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196898.5

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y488, F4K5D9
      Conserved Domains (3) summary
      pfam12576
      Location:546 → 666
      DUF3754; Protein of unknown function (DUF3754)
      cl21472
      Location:106 → 161
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      cl21720
      Location:77 → 117
      Peptidase_M17; Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and ...

    2. NM_001343301.1 → NP_001332332.1  aminopeptidase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BGS3, A0A5S9Y488
    Nucleotide Protein
    Heading Accession and Version

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