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    Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832062, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein
    Primary source
    TAIR:AT5G19420
    Locus tag
    AT5G19420
    See related
    Araport:AT5G19420
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7K24.170; F7K24_170
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    10
    Sequence:
    Chromosome: 5; NC_003076.8 (6547625..6553283, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Telomerase activating protein Est1 Neighboring gene ABC-2 type transporter family protein Neighboring gene RING/U-box superfamily protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene calcium-dependent protein kinase 19

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Polar recruitment of RLD by LAZY1-like protein during gravity signaling in root branch angle control. Furutani M, et al. Nat Commun, 2020 Jan 3. PMID 31900388, Free PMC Article
    2. Connected function of PRAF/RLD and GNOM in membrane trafficking controls intrinsic cell polarity in plants. Wang L, et al. Nat Commun, 2022 Jan 10. PMID 35013279, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001203409.1
    NM_001343600.1
    NM_121947.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in stomatal complex development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein
    NP_001190338.1
    • Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; FUNCTIONS IN: chromatin binding, zinc ion binding, Ran GTPase binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, FYVE-type (InterPro:IPR000306), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-related (InterPro:IPR017455), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Pleckstrin homology-type (InterPro:IPR011993), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT5G12350.1).
    NP_197443.3
    • Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; FUNCTIONS IN: chromatin binding, zinc ion binding, Ran GTPase binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Pleckstrin homology (InterPro:IPR001849), Zinc finger, FYVE-type (InterPro:IPR000306), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-related (InterPro:IPR017455), Pleckstrin homology-type (InterPro:IPR011993), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT5G12350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6547625..6553283 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121947.4 → NP_197443.3  Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197443.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y5Y7, A0A654G2N7, F4K149
      Conserved Domains (7) summary
      COG5184
      Location:323 → 652
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
      cd13365
      Location:20 → 130
      PH_PLC_plant-like; Plant-like Phospholipase C (PLC) pleckstrin homology (PH) domain
      pfam01363
      Location:656 → 723
      FYVE; FYVE zinc finger
      pfam08381
      Location:1030 → 1085
      BRX; Transcription factor regulating root and shoot growth via Pin3
      pfam12718
      Location:881 → 925
      Tropomyosin_1; Tropomyosin like
      pfam13713
      Location:915 → 948
      BRX_N; Transcription factor BRX N-terminal domain
      pfam16627
      Location:956 → 1024
      BRX_assoc; Unstructured region between BRX_N and BRX domain

    2. NM_001343600.1 → NP_001330907.1  Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BC78, A0A654G2N7

    3. NM_001203409.1 → NP_001190338.1  Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190338.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G2N7, F4K148
      Conserved Domains (8) summary
      cd13365
      Location:57 → 164
      PH_PLC_plant-like; Plant-like Phospholipase C (PLC) pleckstrin homology (PH) domain
      pfam00415
      Location:416 → 466
      RCC1; Regulator of chromosome condensation (RCC1) repeat
      pfam01363
      Location:690 → 757
      FYVE; FYVE zinc finger
      pfam08381
      Location:1064 → 1118
      BRX; Transcription factor regulating root and shoot growth via Pin3
      pfam08581
      Location:906 → 956
      Tup_N; Tup N-terminal
      pfam13540
      Location:348 → 377
      RCC1_2; Regulator of chromosome condensation (RCC1) repeat
      pfam13713
      Location:949 → 984
      BRX_N; Transcription factor BRX N-terminal domain
      pfam16627
      Location:990 → 1057
      BRX_assoc; Unstructured region between BRX_N and BRX domain
    Nucleotide Protein
    Heading Accession and Version

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