U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    EIF3B-2 eukaryotic translation initiation factor 3B-2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832647, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    EIF3B-2
    Official Full Name
    eukaryotic translation initiation factor 3B-2
    Primary source
    TAIR:AT5G25780
    Locus tag
    AT5G25780
    See related
    Araport:AT5G25780
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATEIF3B-2; EIF3B; EUKARYOTIC TRANSLATION INITIATION FACTOR 3B; eukaryotic translation initiation factor 3B-2; F18A17.30; F18A17_30
    Summary
    member of eIF3b - eukaryotic initiation factor 3b
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See EIF3B-2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (8973247..8976913, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Tesmin/TSO1-like CXC domain-containing protein Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Plant initiation factor 3 subunit composition resembles mammalian initiation factor 3 and has a novel subunit. Burks EA, et al. J Biol Chem, 2001 Jan 19. PMID 11042177
    2. Arabidopsis eIF3e (INT-6) associates with both eIF3c and the COP9 signalosome subunit CSN7. Yahalom A, et al. J Biol Chem, 2001 Jan 5. PMID 11029466
    3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_122479.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables translation initiation factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables translation initiation factor activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    enables translation initiation factor binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    eukaryotic translation initiation factor 3B-2
    NP_568477.1
    • eukaryotic translation initiation factor 3B-2 (EIF3B-2); FUNCTIONS IN: protein binding, nucleic acid binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cytosol, nucleus, cytoplasm; EXPRESSED IN: cultured cell, seed; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Eukaryotic translation initiation factor 2A, central region (InterPro:IPR013979), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Translation initiation factor eIF-3b (InterPro:IPR011400), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: translation initiation factor 3B1 (TAIR:AT5G27640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      8973247..8976913 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122479.4 → NP_568477.1  eukaryotic translation initiation factor 3B-2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568477.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UL74, A0A5S9Y7G6, A0A654G433, Q8GUM1
      Conserved Domains (2) summary
      COG5354
      Location:180 → 713
      COG5354; Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
      cd12278
      Location:56 → 140
      RRM_eIF3B; RNA recognition motif (RRM) found in eukaryotic translation initiation factor 3 subunit B (eIF-3B) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools