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    double-stranded RNA-binding domain (DsRBD)-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827840, updated on 18-Sep-2024

    Summary

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    Official Full Name
    double-stranded RNA-binding domain (DsRBD)-containing protein
    Primary source
    TAIR:AT4G20920
    Locus tag
    AT4G20920
    See related
    Araport:AT4G20920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T13K14.80; T13K14_80
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    10
    Sequence:
    Chromosome: 4; NC_003075.7 (11193498..11198068, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene tubulin beta-9 chain Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene double-stranded RNA binding protein-related / DsRBD protein-like protein Neighboring gene 6-phosphogluconate dehydrogenase family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables O-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    double-stranded RNA-binding domain (DsRBD)-containing protein
    NP_001320015.1
    • double-stranded RNA-binding domain (DsRBD)-containing protein; FUNCTIONS IN: double-stranded RNA binding; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: RNA-binding protein Lupus La (InterPro:IPR006630), Double-stranded RNA-binding (InterPro:IPR001159); BEST Arabidopsis thaliana protein match is: double-stranded RNA binding protein-related / DsRBD protein-related (TAIR:AT4G20910.2); Has 124 Blast hits to 119 proteins in 45 species: Archae - 0; Bacteria - 65; Metazoa - 3; Fungi - 2; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      11193498..11198068 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341463.1 → NP_001328416.1  double-stranded RNA-binding domain (DsRBD)-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4L0, Q9SUC1

    2. NM_001341462.1 → NP_001328415.1  double-stranded RNA-binding domain (DsRBD)-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4L0, Q9SUC1

    3. NM_001341461.1 → NP_001320015.1  double-stranded RNA-binding domain (DsRBD)-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JVP4, Q9SUC1

    4. NM_118210.4 → NP_193824.4  double-stranded RNA-binding domain (DsRBD)-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193824.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JVP4, Q9SUC1
      Conserved Domains (2) summary
      pfam00035
      Location:15 → 73
      dsrm; Double-stranded RNA binding motif
      cl17173
      Location:680 → 726
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

    5. NM_001341464.1 → NP_001328417.1  double-stranded RNA-binding domain (DsRBD)-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4L0, Q9SUC1
    Nucleotide Protein
    Heading Accession and Version

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