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    GATA7 GATA transcription factor 7 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829781, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GATA7
    Official Full Name
    GATA transcription factor 7
    Primary source
    TAIR:AT4G36240
    Locus tag
    AT4G36240
    See related
    Araport:AT4G36240
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F23E13.130; F23E13_130; GATA transcription factor 7
    Summary
    Encodes a member of the GATA factor family of zinc finger transcription factors.
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    Genomic context

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    See GATA7 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (17147140..17148496, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ferulic acid 5-hydroxylase 1 Neighboring gene uncharacterized protein Neighboring gene tRNA-Pro Neighboring gene aldehyde dehydrogenase 3F1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Conservation, convergence, and divergence of light-responsive, circadian-regulated, and tissue-specific expression patterns during evolution of the Arabidopsis GATA gene family. Manfield IW, et al. Plant Physiol, 2007 Feb. PMID 17208962, Free PMC Article
    2. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_119792.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within circadian rhythm IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to light stimulus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    GATA transcription factor 7
    NP_195347.1
    • GATA transcription factor 7 (GATA7); CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 5 (TAIR:AT5G66320.2); Has 1362 Blast hits to 1315 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 522; Plants - 778; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      17147140..17148496 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119792.4 → NP_195347.1  GATA transcription factor 7 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195347.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65515
      UniProtKB/TrEMBL
      A0A178UWZ0, A0A5S9XZ48, A0A654FVZ6
      Conserved Domains (1) summary
      smart00401
      Location:164 → 214
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O65515.1

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