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    FRS1 FAR1-related sequence 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827744, updated on 18-Sep-2024

    Summary

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    Official Symbol
    FRS1
    Official Full Name
    FAR1-related sequence 1
    Primary source
    TAIR:AT4G19990
    Locus tag
    AT4G19990
    See related
    Araport:AT4G19990
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F18F4.90; F18F4_90; FAR1-related sequence 1
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    Genomic context

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    See FRS1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (10832214..10835702)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene nucleotide-diphospho-sugar transferase family protein Neighboring gene uncharacterized protein Neighboring gene Acyl-CoA N-acyltransferases (NAT) superfamily protein Neighboring gene VQ motif-containing protein Neighboring gene plastid transcriptionally active 9

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001341387.1
    NM_001341392.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    FAR1-related sequence 1
    NP_001190776.1
    • FAR1-related sequence 1 (FRS1); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FRS (FAR1 Related Sequences) transcription factor family (TAIR:AT4G15090.1).
    NP_001320002.1
    • FAR1-related sequence 1 (FRS1); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: far-red elongated hypocotyls 3 (TAIR:AT3G22170.2); Has 1641 Blast hits to 1185 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 8; Plants - 1612; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      10832214..10835702
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341388.1 → NP_001328358.1  FAR1-related sequence 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V2F6, A0A1P8B4E2

    2. NM_001203847.2 → NP_001190776.1  FAR1-related sequence 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190776.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XU77, A0A654FR42, F4JU19
      Conserved Domains (4) summary
      smart00575
      Location:518 → 542
      ZnF_PMZ; plant mutator transposase zinc finger
      PLN03097
      Location:18 → 733
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
      pfam03101
      Location:36 → 137
      FAR1; FAR1 DNA-binding domain
      pfam10551
      Location:227 → 312
      MULE; MULE transposase domain

    3. NM_001341389.1 → NP_001328360.1  FAR1-related sequence 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V2F6, A0A1P8B4E2

    4. NM_001341390.1 → NP_001328359.1  FAR1-related sequence 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V2F6, A0A1P8B4E6

    5. NM_001341391.1 → NP_001328362.1  FAR1-related sequence 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XU77, A0A654FR42, F4JU19

    6. NM_001341387.1 → NP_001320002.1  FAR1-related sequence 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V2F6, A0A2H1ZEP3

    7. NM_001341392.1 → NP_001328361.1  FAR1-related sequence 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V2F6, A0A1P8B4E0
    Nucleotide Protein
    Heading Accession and Version

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