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    RLP48 receptor like protein 48 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827022, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RLP48
    Official Full Name
    receptor like protein 48
    Primary source
    TAIR:AT4G13880
    Locus tag
    AT4G13880
    See related
    Araport:AT4G13880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtRLP48; F18A5.270; F18A5_270; receptor like protein 48
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    Genomic context

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    See RLP48 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (8025804..8028614)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene glycine-rich RNA-binding protein 2 Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene Werner syndrome-like exonuclease Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Uncovering genes and ploidy involved in the high diversity in root hair density, length and response to local scarce phosphate in Arabidopsis thaliana. Stetter MG, et al. PLoS One, 2015. PMID 25781967, Free PMC Article
    2. The leucine-rich repeat as a protein recognition motif. Kobe B, et al. Curr Opin Struct Biol, 2001 Dec. PMID 11751054
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Knock-out mutants in identified candidate genes (CYR1, At1g32360 and RLP48) were isolated and differences in root hair traits in the mutants were confirmed.
      Title: Uncovering genes and ploidy involved in the high diversity in root hair density, length and response to local scarce phosphate in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    General gene information

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    NM_117462.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in root hair elongation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within signal transduction IC
    Inferred by Curator
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    receptor like protein 48
    NP_193124.2
    • receptor like protein 48 (RLP48); INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 47 (TAIR:AT4G13810.2); Has 81614 Blast hits to 24875 proteins in 996 species: Archae - 37; Bacteria - 6005; Metazoa - 13733; Fungi - 821; Plants - 54574; Viruses - 20; Other Eukaryotes - 6424 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8025804..8028614
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117462.2 → NP_193124.2  receptor like protein 48 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193124.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JTU7, Q9SVM5
      Conserved Domains (5) summary
      COG4886
      Location:214 → 503
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd00116
      Location:347 → 470
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:114 → 137
      LRR_RI; leucine-rich repeat [structural motif]
      pfam08263
      Location:35 → 82
      LRRNT_2; Leucine rich repeat N-terminal domain
      pfam13855
      Location:558 → 615
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

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