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    GDA1/CD39 nucleoside phosphatase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827656, updated on 18-Sep-2024

    Summary

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    Official Full Name
    GDA1/CD39 nucleoside phosphatase family protein
    Primary source
    TAIR:AT4G19180
    Locus tag
    AT4G19180
    See related
    Araport:AT4G19180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    APY7; apyrase 7; AtAPY7; T18B16.150; T18B16_150
    Summary
    Encodes a putative apyrase involved in pollen exine pattern formation and anther dehiscence.
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (10485116..10488534, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene transglutaminase family protein Neighboring gene nine-cis-epoxycarotenoid dioxygenase 4 Neighboring gene nodulin MtN21 /EamA-like transporter family protein Neighboring gene zinc knuckle (CCHC-type) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Co-regulation of exine wall patterning, pollen fertility and anther dehiscence by Arabidopsis apyrases 6 and 7. Yang J, et al. Plant Physiol Biochem, 2013 Aug. PMID 23728389
    2. Growth-inhibiting effects of the unconventional plant APYRASE 7 of Arabidopsis thaliana influences the LRX/RALF/FER growth regulatory module. Gupta S, et al. PLoS Genet, 2024 Jan. PMID 38190412, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Growth-inhibiting effects of the unconventional plant APYRASE 7 of Arabidopsis thaliana influences the LRX/RALF/FER growth regulatory module.
      Title: Growth-inhibiting effects of the unconventional plant APYRASE 7 of Arabidopsis thaliana influences the LRX/RALF/FER growth regulatory module.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    NM_001341328.1
    NM_001341329.1
    NM_118037.7

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables apyrase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within anther dehiscence IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen exine formation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen exine formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    GDA1/CD39 nucleoside phosphatase family protein
    NP_567579.2
    • GDA1/CD39 nucleoside phosphatase family protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: GDA1/CD39 nucleoside phosphatase family protein (TAIR:AT2G02970.1); Has 1352 Blast hits to 1349 proteins in 221 species: Archae - 0; Bacteria - 34; Metazoa - 590; Fungi - 302; Plants - 310; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      10485116..10488534 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118037.7 → NP_567579.2  GDA1/CD39 nucleoside phosphatase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567579.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JSH1, O49676
      UniProtKB/TrEMBL
      A0A178UU48, A0A5S9XUR5, A0A654FQS3
      Conserved Domains (1) summary
      cl17037
      Location:144 → 560
      NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily

    2. NM_001341328.1 → NP_001329939.1  GDA1/CD39 nucleoside phosphatase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JSH1, O49676
      UniProtKB/TrEMBL
      A0A178UU48, A0A5S9XUR5, A0A654FQS3

    3. NM_001341329.1 → NP_001329940.1  GDA1/CD39 nucleoside phosphatase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JSH1, O49676
      UniProtKB/TrEMBL
      A0A178UU48, A0A5S9XUR5, A0A654FQS3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JSH1.1

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