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    transmembrane protein, putative (DUF679) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828534, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transmembrane protein, putative (DUF679)
    Primary source
    TAIR:AT4G24310
    Locus tag
    AT4G24310
    See related
    Araport:AT4G24310
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T22A6.140; T22A6_140
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_003075.7 (12600803..12601726)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene MAC/Perforin domain-containing protein Neighboring gene Peptidase C50, separase Neighboring gene Ubiquitin carboxyl-terminal hydrolase family protein Neighboring gene hypothetical protein (DUF1682)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression, localisation and phylogeny of a novel family of plant-specific membrane proteins. Kasaras A, et al. Plant Biol (Stuttg), 2010 Sep. PMID 20712629
    2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_118564.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in endomembrane system organization ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in plant organ senescence IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein, putative (DUF679)
    NP_194162.1
    • Protein of unknown function (DUF679); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF679 (InterPro:IPR007770); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF679) (TAIR:AT3G02430.1); Has 267 Blast hits to 259 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 267; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12600803..12601726
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118564.3 → NP_194162.1  transmembrane protein, putative (DUF679) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194162.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9STW3
      UniProtKB/TrEMBL
      A0A178V6Z4, A0A5S9XW18
      Conserved Domains (1) summary
      pfam05078
      Location:40 → 204
      DUF679; Protein of unknown function (DUF679)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9STW3.1

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