U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    GTPase Der (DUF707) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826896, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    GTPase Der (DUF707)
    Primary source
    TAIR:AT4G12840
    Locus tag
    AT4G12840
    See related
    Araport:AT4G12840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T20K18.190; T20K18_190
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 4
    Exon count:
    14
    Sequence:
    Chromosome: 4; NC_003075.7 (7533439..7536266, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene F-box/kelch-repeat protein, putative (DUF295) Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene Far-red impaired responsive (FAR1) family protein Neighboring gene ncRNA Neighboring gene EF hand calcium-binding protein family

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001160755.3
    NM_001340809.1
    NM_117353.7

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glycosyltransferase activity ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    GTPase Der (DUF707)
    NP_001154227.2
    • Protein of unknown function (DUF707); EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT4G18530.1); Has 319 Blast hits to 319 proteins in 27 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 0; Plants - 303; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    NP_193020.6
    • Protein of unknown function (DUF707); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT4G18530.1); Has 319 Blast hits to 319 proteins in 27 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 0; Plants - 303; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      7533439..7536266 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001160755.3 → NP_001154227.2  GTPase Der (DUF707) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154227.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FNM7, F4JRH1
      Conserved Domains (1) summary
      pfam05212
      Location:77 → 384
      DUF707; Protein of unknown function (DUF707)

    2. NM_117353.7 → NP_193020.6  GTPase Der (DUF707) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193020.6

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FNM7, B3LFC6
      Conserved Domains (1) summary
      pfam05212
      Location:77 → 384
      DUF707; Protein of unknown function (DUF707)

    3. NM_001340809.1 → NP_001328858.1  GTPase Der (DUF707) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B5Y1, A0A7G2F3C5
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.