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    Cullin family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826818, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Cullin family protein
    Primary source
    TAIR:AT4G12100
    Locus tag
    AT4G12100
    See related
    Araport:AT4G12100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F16J13.170; F16J13_170
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (7246338..7248127, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene AT-hook motif nuclear-localized protein 1 Neighboring gene Cornichon family protein Neighboring gene sterol-4alpha-methyl oxidase 1-1 Neighboring gene tRNA-Lys

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_117280.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables ubiquitin protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Cullin family protein
    NP_192947.1
    • Cullin family protein; FUNCTIONS IN: ubiquitin protein ligase binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cullin-RING ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: Cullin, N-terminal (InterPro:IPR001373), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: cullin4 (TAIR:AT5G46210.1); Has 1267 Blast hits to 1267 proteins in 186 species: Archae - 0; Bacteria - 0; Metazoa - 680; Fungi - 268; Plants - 230; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      7246338..7248127 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117280.3 → NP_192947.1  Cullin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192947.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SZ75
      UniProtKB/TrEMBL
      A0A5S9XRK1, A0A654FNJ3
      Conserved Domains (1) summary
      pfam00888
      Location:82 → 412
      Cullin; Cullin family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SZ75.1

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