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    GH9B17 glycosyl hydrolase 9B17 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830055, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GH9B17
    Official Full Name
    glycosyl hydrolase 9B17
    Primary source
    TAIR:AT4G39000
    Locus tag
    AT4G39000
    See related
    Araport:AT4G39000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtGH9B17; F19H22.100; F19H22_100; glycosyl hydrolase 9B17
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    Genomic context

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    See GH9B17 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (18171589..18173840, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene glycosyl hydrolase 9B16 Neighboring gene glycosyl hydrolase 9B18 Neighboring gene SH3 domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression patterns of two Arabidopsis endo-beta-1,4-glucanase genes (At3g43860, At4g39000) in reproductive development. Xie XJ, et al. Mol Biol (Mosk), 2011 May-Jun. PMID 21790012
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. these results suggested that endo-beta-1,4-D-glucanases At3g43860 and At4g39000 play specific roles in Arabidopsis sexual reproduction.
      Title: Expression patterns of two Arabidopsis endo-beta-1,4-glucanase genes (At3g43860, At4g39000) in reproductive development.
    Submit: New GeneRIF Correction

    General gene information

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    NM_120060.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cellulase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    glycosyl hydrolase 9B17
    NP_195611.1
    • glycosyl hydrolase 9B17 (GH9B17); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B18 (TAIR:AT4G39010.1); Has 1741 Blast hits to 1731 proteins in 246 species: Archae - 2; Bacteria - 582; Metazoa - 188; Fungi - 17; Plants - 915; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      18171589..18173840 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120060.2 → NP_195611.1  glycosyl hydrolase 9B17 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195611.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GY58, Q9SVJ3
      UniProtKB/TrEMBL
      A0MFC8
      Conserved Domains (1) summary
      cl02959
      Location:24 → 493
      Glyco_hydro_9; Glycosyl hydrolase family 9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GY58.2

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