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    Basic-leucine zipper (bZIP) transcription factor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830045, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Basic-leucine zipper (bZIP) transcription factor family protein
    Primary source
    TAIR:AT4G38900
    Locus tag
    AT4G38900
    See related
    Araport:AT4G38900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    basic leucine-zipper 29; bZIP29; F19H22.5
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (18139237..18142071, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene GLN phosphoribosyl pyrophosphate amidotransferase 3 Neighboring gene FMN-linked oxidoreductases superfamily protein Neighboring gene uncharacterized protein Neighboring gene basic pentacysteine 5 Neighboring gene vacuolar-type H[+]-ATPase C3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional characterization of the Arabidopsis transcription factor bZIP29 reveals its role in leaf and root development. Van Leene J, et al. J Exp Bot, 2016 Oct. PMID 27660483, Free PMC Article
    2. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Lozano-Sotomayor P, et al. Plant J, 2016 Nov. PMID 27402171
    3. Analysis of functions of VIP1 and its close homologs in osmosensory responses of Arabidopsis thaliana. Tsugama D, et al. PLoS One, 2014. PMID 25093810, Free PMC Article
    4. bZIP transcription factors in Arabidopsis. Jakoby M, et al. Trends Plant Sci, 2002 Mar. PMID 11906833
    5. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. functional characterization reveals its role in leaf and root development
      Title: Functional characterization of the Arabidopsis transcription factor bZIP29 reveals its role in leaf and root development.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001036733.4
    NM_120050.4
    NM_179189.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein homodimerization activity IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within reproductive shoot system development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Basic-leucine zipper (bZIP) transcription factor family protein
    NP_001031810.1
    • Basic-leucine zipper (bZIP) transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT2G21230.1); Has 3605 Blast hits to 2736 proteins in 325 species: Archae - 8; Bacteria - 323; Metazoa - 540; Fungi - 250; Plants - 1223; Viruses - 1; Other Eukaryotes - 1260 (source: NCBI BLink).
    NP_195601.1
    • Basic-leucine zipper (bZIP) transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT2G21230.1); Has 2903 Blast hits to 2067 proteins in 270 species: Archae - 2; Bacteria - 286; Metazoa - 482; Fungi - 174; Plants - 835; Viruses - 0; Other Eukaryotes - 1124 (source: NCBI BLink).
    NP_849520.1
    • Basic-leucine zipper (bZIP) transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT2G21230.1); Has 3605 Blast hits to 2736 proteins in 325 species: Archae - 8; Bacteria - 323; Metazoa - 540; Fungi - 250; Plants - 1223; Viruses - 1; Other Eukaryotes - 1260 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      18139237..18142071 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001036733.4 → NP_001031810.1  Basic-leucine zipper (bZIP) transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031810.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8H1F0, Q8RXK4, Q9T0J7
      UniProtKB/TrEMBL
      A0A178UWI2, A0A5S9Y093
      Conserved Domains (2) summary
      smart00935
      Location:378 → 491
      OmpH; Outer membrane protein (OmpH-like)
      cd14703
      Location:397 → 446
      bZIP_plant_RF2; Basic leucine zipper (bZIP) domain of Plant RF2-like transcription factors: a DNA-binding and dimerization domain

    2. NM_179189.4 → NP_849520.1  Basic-leucine zipper (bZIP) transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849520.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8H1F0, Q8RXK4, Q9T0J7
      UniProtKB/TrEMBL
      A0A178UWI2, A0A5S9Y093
      Conserved Domains (2) summary
      smart00935
      Location:378 → 491
      OmpH; Outer membrane protein (OmpH-like)
      cd14703
      Location:397 → 446
      bZIP_plant_RF2; Basic leucine zipper (bZIP) domain of Plant RF2-like transcription factors: a DNA-binding and dimerization domain

    3. NM_120050.4 → NP_195601.1  Basic-leucine zipper (bZIP) transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195601.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y093
      Conserved Domains (2) summary
      cd14703
      Location:406 → 452
      bZIP_plant_RF2; Basic leucine zipper (bZIP) domain of Plant RF2-like transcription factors: a DNA-binding and dimerization domain
      cl23720
      Location:404 → 510
      RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H1F0.1

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