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    GH9B13 glycosyl hydrolase 9B13 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828080, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GH9B13
    Official Full Name
    glycosyl hydrolase 9B13
    Primary source
    TAIR:AT4G02290
    Locus tag
    AT4G02290
    See related
    Araport:AT4G02290
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtGH9B13; glycosyl hydrolase 9B13; T2H3.5; T2H3_5
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    Genomic context

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    See GH9B13 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (1002338..1005305, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene root hair specific 13 Neighboring gene sucrose synthase 3 Neighboring gene ncRNA Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NM_001340370.1
    NM_116462.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cellulase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    glycosyl hydrolase 9B13
    NP_192138.1
    • glycosyl hydrolase 9B13 (GH9B13); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: cellulase 2 (TAIR:AT1G02800.1); Has 1736 Blast hits to 1717 proteins in 249 species: Archae - 2; Bacteria - 566; Metazoa - 187; Fungi - 17; Plants - 926; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      1002338..1005305 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116462.4 → NP_192138.1  glycosyl hydrolase 9B13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192138.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O81416
      UniProtKB/TrEMBL
      A0A5S9XP54, A0A654FL72
      Conserved Domains (1) summary
      PLN02266
      Location:12 → 516
      PLN02266; endoglucanase

    2. NM_001340370.1 → NP_001328883.1  glycosyl hydrolase 9B13 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UVL7, A0A1P8B606
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O81416.1

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