U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ABCB5 P-glycoprotein 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826974, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ABCB5
    Official Full Name
    P-glycoprotein 5
    Primary source
    TAIR:AT4G01830
    Locus tag
    AT4G01830
    See related
    Araport:AT4G01830
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATP-binding cassette B5; P-glycoprotein 5; PGP5; T7B11.9; T7B11_9
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ABCB5 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    11
    Sequence:
    Chromosome: 4; NC_003075.7 (785551..790447, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Albino or Glassy Yellow 1 Neighboring gene Sec23/Sec24 protein transport family protein Neighboring gene P-glycoprotein 3 Neighboring gene Ca2+ activated outward rectifying K+ channel 5 Neighboring gene S-adenosylmethionine synthetase 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATPase-coupled transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    P-glycoprotein 5
    NP_192092.1
    • P-glycoprotein 5 (PGP5); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 3 (TAIR:AT4G01820.1); Has 845817 Blast hits to 392712 proteins in 4168 species: Archae - 14768; Bacteria - 661377; Metazoa - 18002; Fungi - 12658; Plants - 9684; Viruses - 32; Other Eukaryotes - 129296 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      785551..790447 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340339.1 → NP_001329375.1  P-glycoprotein 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V6D0, A0A1P8B7I4

    2. NM_116413.2 → NP_192092.1  P-glycoprotein 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192092.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SYI3
      UniProtKB/TrEMBL
      A0A178V6D0
      Conserved Domains (3) summary
      cd03249
      Location:353 → 591
      ABC_MTABC3_MDL1_MDL2; ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins
      PTZ00265
      Location:2 → 1224
      PTZ00265; multidrug resistance protein (mdr1); Provisional
      pfam00664
      Location:35 → 293
      ABC_membrane; ABC transporter transmembrane region
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SYI3.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.