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    RMA3 RING membrane-anchor 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828856, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RMA3
    Official Full Name
    RING membrane-anchor 3
    Primary source
    TAIR:AT4G27470
    Locus tag
    AT4G27470
    See related
    Araport:AT4G27470
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATRMA3; F27G19.70; F27G19_70; RING membrane-anchor 3
    Summary
    Encodes a RING finger E3 ubiquitin ligase.
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    Genomic context

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    See RMA3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (13734922..13736518)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene protochlorophyllide oxidoreductase B Neighboring gene aluminum induced protein with YGL and LRDR motifs Neighboring gene Cystathionine beta-synthase (CBS) family protein Neighboring gene Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein Neighboring gene 3'-5'-exoribonuclease family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of three Arabidopsis homologs of human RING membrane anchor E3 ubiquitin ligase. Son O, et al. Plant Cell Rep, 2009 Apr. PMID 19224217
    2. The Chinese wild grapevine (Vitis pseudoreticulata) E3 ubiquitin ligase Erysiphe necator-induced RING finger protein 1 (EIRP1) activates plant defense responses by inducing proteolysis of the VpWRKY11 transcription factor. Yu Y, et al. New Phytol, 2013 Nov. PMID 23905547
    3. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RMA1, RMA2 and RMA3 all have E3 ubiquitin ligase activity and are localized to the endoplasmic reticulum. [RMA3]
      Title: Characterization of three Arabidopsis homologs of human RING membrane anchor E3 ubiquitin ligase.
    Submit: New GeneRIF Correction

    General gene information

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    NM_118882.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ubiquitin-protein transferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RING membrane-anchor 3
    NP_194477.2
    • RING membrane-anchor 3 (RMA3); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING membrane-anchor 1 (TAIR:AT4G03510.2); Has 2828 Blast hits to 2826 proteins in 265 species: Archae - 0; Bacteria - 0; Metazoa - 1348; Fungi - 459; Plants - 695; Viruses - 22; Other Eukaryotes - 304 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13734922..13736518
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118882.3 → NP_194477.2  RING membrane-anchor 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194477.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GUK7, Q9SZS2
      UniProtKB/TrEMBL
      A0A178V4H3, A0A5S9XWF7, A0A654FT94
      Conserved Domains (1) summary
      PLN03208
      Location:37 → 228
      PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GUK7.1

    Gene LinkOut

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