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    pde191 Mitochondrial transcription termination factor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829972, updated on 18-Sep-2024

    Summary

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    Official Symbol
    pde191
    Official Full Name
    Mitochondrial transcription termination factor family protein
    Primary source
    TAIR:AT4G38160
    Locus tag
    AT4G38160
    See related
    Araport:AT4G38160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20D10.280; F20D10_280; pigment defective 191
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    Genomic context

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    See pde191 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (17902266..17904330)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene histone deacetylase 1 Neighboring gene RING/U-box superfamily protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene FAR1-related sequence 9 Neighboring gene FAR1-related sequence 5 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis mTERF6 is required for leaf patterning. Robles P, et al. Plant Sci, 2018 Jan. PMID 29241561
    2. A Member of the Arabidopsis Mitochondrial Transcription Termination Factor Family Is Required for Maturation of Chloroplast Transfer RNAIle(GAU). Romani I, et al. Plant Physiol, 2015 Sep. PMID 26152711, Free PMC Article
    3. A nuclear-encoded protein, mTERF6, mediates transcription termination of rpoA polycistron for plastid-encoded RNA polymerase-dependent chloroplast gene expression and chloroplast development. Zhang Y, et al. Sci Rep, 2018 Aug 9. PMID 30093718, Free PMC Article
    4. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Data suggest mitochondrial transcription termination factor (mTERF6) is more likely a factor required for transcription termination of RNA polymerase alpha subunit (rpoA) polycistron, which is essential for chloroplast gene expression and chloroplast development.
      Title: A nuclear-encoded protein, mTERF6, mediates transcription termination of rpoA polycistron for plastid-encoded RNA polymerase-dependent chloroplast gene expression and chloroplast development.
    2. The results of this study uncover a new role for mTERF6 in leaf patterning and highlight the importance of mTERFs in plant development.
      Title: Arabidopsis mTERF6 is required for leaf patterning.
    3. There is a specific interaction between mTERF6 and an RNA sequence in the chloroplast isoleucine transfer RNA gene (trnI.2) located in the rRNA operon. mTERF6 is required for the maturation of trnI.2. [mTERF6]
      Title: A Member of the Arabidopsis Mitochondrial Transcription Termination Factor Family Is Required for Maturation of Chloroplast Transfer RNAIle(GAU).
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    • At4g38160_Arabidopsis_lyrata_ssp._lyrata_CAN1 (e-PCR)
    • At4g38160_Arabidopsis_lyrata_ssp._petraea_GER1 (e-PCR)
    NM_001342483.1
    NM_202974.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables double-stranded DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables single-stranded RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within chloroplast organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in tRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in thylakoid membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Mitochondrial transcription termination factor family protein
    NP_001190948.1
    • pigment defective 191 (pde191); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1).
    NP_001320159.1
    • pigment defective 191 (pde191); CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 1644 Blast hits to 948 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 0; Plants - 1414; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
    NP_974703.1
    • pigment defective 191 (pde191); CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      17902266..17904330
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119977.5 → NP_195529.1  Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195529.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SZL6
      UniProtKB/TrEMBL
      A0A178UWF1, A0A5S9Y042, A0A654FWN3
      Conserved Domains (1) summary
      cl19765
      Location:12 → 320
      mTERF

    2. NM_001204019.1 → NP_001190948.1  Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190948.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UWF1, A0A5S9Y042, F4JSY9
      Conserved Domains (1) summary
      cl19765
      Location:12 → 320
      mTERF; mTERF

    3. NM_202974.2 → NP_974703.1  Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974703.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UWF1, A0A5S9Y042, F4JSZ0
      Conserved Domains (1) summary
      cl19765
      Location:12 → 320
      mTERF; mTERF

    4. NM_001342483.1 → NP_001320159.1  Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SZL6
      UniProtKB/TrEMBL
      A0A178UWF1, A0A5S9Y042, A0A654FWN3
      Conserved Domains (1) summary
      cl19765
      Location:12 → 320
      mTERF
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SZL6.1

    Gene LinkOut

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