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    Polyketide cyclase / dehydrase and lipid transport protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828138, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Polyketide cyclase / dehydrase and lipid transport protein
    Primary source
    TAIR:AT4G01650
    Locus tag
    AT4G01650
    See related
    Araport:AT4G01650
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T15B16.3; T15B16_3
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (704377..707045, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene expansin A17 Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene ABC transporter 1 Neighboring gene uncharacterized protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001340333.1
    NM_116395.2
    NM_178951.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Polyketide cyclase / dehydrase and lipid transport protein
    NP_192074.1
    • Polyketide cyclase / dehydrase and lipid transport protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08720.1); Has 410 Blast hits to 381 proteins in 74 species: Archae - 0; Bacteria - 144; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).
    NP_849282.1
    • Polyketide cyclase / dehydrase and lipid transport protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08720.1); Has 410 Blast hits to 381 proteins in 74 species: Archae - 0; Bacteria - 144; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      704377..707045 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116395.2 → NP_192074.1  Polyketide cyclase / dehydrase and lipid transport protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192074.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9M120, Q9ZSI3
      Conserved Domains (1) summary
      cd08866
      Location:117 → 279
      SRPBCC_11; Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

    2. NM_178951.2 → NP_849282.1  Polyketide cyclase / dehydrase and lipid transport protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849282.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q84VW2
      Conserved Domains (1) summary
      cd08866
      Location:40 → 202
      SRPBCC_11; Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

    3. NM_001340333.1 → NP_001328327.1  Polyketide cyclase / dehydrase and lipid transport protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4E3
    Nucleotide Protein
    Heading Accession and Version

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