U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    KNAT5 homeobox protein knotted-1-like 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829335, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    KNAT5
    Official Full Name
    homeobox protein knotted-1-like 5
    Primary source
    TAIR:AT4G32040
    Locus tag
    AT4G32040
    See related
    Araport:AT4G32040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10N7.150; F10N7_150; KNOTTED1-like homeobox gene 5; TRANSCRIPTION FACTOR
    Summary
    A member of Class II KN1-like homeodomain transcription factors factors (together with KNAT3 and KNAT4), with greatest homology to the maize knox1 homeobox protein. Regulates photomorphogenic responses and represses late steps in gibberellin biosynthesis. KNAT5 promoter activity showed cell-type specific pattern along longitudinal root axis, primarily in the epidermis of the distal end of primary root elongation zone.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See KNAT5 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (15493989..15496381)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene serine/arginine repetitive matrix-like protein Neighboring gene uncharacterized protein Neighboring gene neurochondrin family protein Neighboring gene calcium-binding EF hand family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A Role for KNAT Class II Genes in Root Development. Truernit E, et al. Plant Signal Behav, 2007 Jan. PMID 19704797, Free PMC Article
    2. AtHSPR functions in gibberellin-mediated primary root growth by interacting with KNAT5 and OFP1 in Arabidopsis. Yuan G, et al. Plant Cell Rep, 2023 Oct. PMID 37597006
    3. A map of KNAT gene expression in the Arabidopsis root. Truernit E, et al. Plant Mol Biol, 2006 Jan. PMID 16463096
    4. The Arabidopsis BELL1 and KNOX TALE homeodomain proteins interact through a domain conserved between plants and animals. Bellaoui M, et al. Plant Cell, 2001 Nov. PMID 11701881, Free PMC Article
    5. The Arabidopsis BEL1-LIKE HOMEODOMAIN proteins SAW1 and SAW2 act redundantly to regulate KNOX expression spatially in leaf margins. Kumar R, et al. Plant Cell, 2007 Sep. PMID 17873098, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001342125.1
    NM_119356.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to ethylene stimulus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within detection of ethylene stimulus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    homeobox protein knotted-1-like 5
    NP_194932.1
    • KNOTTED1-like homeobox gene 5 (KNAT5); CONTAINS InterPro DOMAIN/s: ELK (InterPro:IPR005539), KNOX1 (InterPro:IPR005540), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), KNOX2 (InterPro:IPR005541), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNOTTED1-like homeobox gene 3 (TAIR:AT5G25220.2); Has 6199 Blast hits to 6196 proteins in 330 species: Archae - 0; Bacteria - 0; Metazoa - 2065; Fungi - 300; Plants - 3657; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      15493989..15496381
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119356.4 → NP_194932.1  homeobox protein knotted-1-like 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194932.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49387, P48002, Q548P2
      UniProtKB/TrEMBL
      A0A178V1Z3, A0A5S9XXS8
      Conserved Domains (3) summary
      pfam03790
      Location:117 → 156
      KNOX1; KNOX1 domain
      pfam03791
      Location:170 → 221
      KNOX2; KNOX2 domain
      pfam05920
      Location:321 → 360
      Homeobox_KN; Homeobox KN domain

    2. NM_001342125.1 → NP_001328629.1  homeobox protein knotted-1-like 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UZP8, A0A1P8B599, A0A384LCR4
      Conserved Domains (3) summary
      pfam03790
      Location:117 → 156
      KNOX1; KNOX1 domain
      pfam03791
      Location:170 → 221
      KNOX2; KNOX2 domain
      pfam05920
      Location:321 → 360
      Homeobox_KN; Homeobox KN domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P48002.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools