ABCG42 ABC-2 and Plant PDR ABC-type transporter family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: ABCG42
Official Full Name: ABC-2 and Plant PDR ABC-type transporter family protein
Primary source: TAIR:AT4G15233
Locus tag: AT4G15233
See related: Araport:AT4G15233
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: ATP-binding cassette G42
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Genomic context

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See ABCG42 in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 28

Sequence:: Chromosome: 4; NC_003075.7 (8687354..8694733)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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NM_001203808.2

Supported by ESTs:

NM_001341013.1

Supported by ESTs:

NM_001341018.1

Supported by ESTs:

NM_001341019.1

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables ABC-type transporter activity	IEA Inferred from Electronic Annotation more info
enables ATP hydrolysis activity	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: ABC-2 and Plant PDR ABC-type transporter family protein

NP_001190737.1

ABC-2 and Plant PDR ABC-type transporter family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: ABC-2 and Plant PDR ABC-type transporter family protein (TAIR:AT4G15236.1).

NP_001319945.1

ABC-2 and Plant PDR ABC-type transporter family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: ABC-2 and Plant PDR ABC-type transporter family protein (TAIR:AT4G15236.1); Has 374708 Blast hits to 270086 proteins in 3960 species: Archae - 7613; Bacteria - 297947; Metazoa - 9730; Fungi - 8140; Plants - 7347; Viruses - 9; Other Eukaryotes - 43922 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

8687354..8694733

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001341014.1 → NP_001329434.1 ABC-2 and Plant PDR ABC-type transporter family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8B7P4, A0A654FPH8
NM_001341015.1 → NP_001329433.1 ABC-2 and Plant PDR ABC-type transporter family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8B7N9, A0A654FPH8
NM_001341016.1 → NP_001329432.1 ABC-2 and Plant PDR ABC-type transporter family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8B7N9, A0A654FPH8
NM_001341017.1 → NP_001329431.1 ABC-2 and Plant PDR ABC-type transporter family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8B7P4, A0A654FPH8
NM_001341013.1 → NP_001319945.1 ABC-2 and Plant PDR ABC-type transporter family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

F4JJF3, F4JJF4, Q7PC82

UniProtKB/TrEMBL

A0A654FPH8
NM_001341018.1 → NP_001329430.1 ABC-2 and Plant PDR ABC-type transporter family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8B7Q6, A0A654FPH8
NM_001341019.1 → NP_001329435.1 ABC-2 and Plant PDR ABC-type transporter family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8B7P5, A0A654FPH8
NM_001203808.2 → NP_001190737.1 ABC-2 and Plant PDR ABC-type transporter family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001190737.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A654FPH8

Conserved Domains (6) summary

cd03232
Location:797 → 1027

ABCG_PDR_domain2; Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

PLN03140
Location:13 → 1366

PLN03140; ABC transporter G family member; Provisional

pfam01061
Location:1122 → 1351

ABC2_membrane; ABC-2 type transporter

pfam08370
Location:708 → 770

PDR_assoc; Plant PDR ABC transporter associated

pfam14510
Location:58 → 137

ABC_trans_N; ABC-transporter extracellular N-terminal

cl21455
Location:134 → 395

P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases