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    Pectate lyase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821142, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pectate lyase family protein
    Primary source
    TAIR:AT3G01270
    Locus tag
    AT3G01270
    See related
    Araport:AT3G01270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T22N4.10; T22N4_10; T4P13.4; T4P13_4
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (82581..84901, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene splicing regulatory glutamine/lysine-rich-like protein Neighboring gene uncharacterized protein Neighboring gene Galactose mutarotase-like superfamily protein Neighboring gene voltage dependent anion channel 1 Neighboring gene SPFH/Band 7/PHB domain-containing membrane-associated protein family Neighboring gene Protein kinase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Pectate lyase-like lubricates the male gametophyte's path toward its mating partner. Chebli Y, et al. Plant Physiol, 2023 Dec 30. PMID 37658849
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_110993.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables lyase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables pectate lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in pectin catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pectate lyase family protein
    NP_186776.1
    • Pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectate lyase, N-terminal (InterPro:IPR007524), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectate lyase family protein (TAIR:AT5G15110.1); Has 1587 Blast hits to 1580 proteins in 266 species: Archae - 0; Bacteria - 700; Metazoa - 0; Fungi - 174; Plants - 701; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      82581..84901 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_110993.4 → NP_186776.1  Pectate lyase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_186776.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LGC8, Q9SRH4
      UniProtKB/TrEMBL
      A0A178VLQ3, A0A5S9X832, Q08A70
      Conserved Domains (2) summary
      smart00656
      Location:199 → 394
      Amb_all; Amb_all domain
      pfam04431
      Location:29 → 102
      Pec_lyase_N; Pectate lyase, N-terminus
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SRH4.1

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