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    Gm20616 predicted gene 20616 [ Mus musculus (house mouse) ]

    Gene ID: 102638259, updated on 22-Oct-2024

    Summary

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    Official Symbol
    Gm20616provided by MGI
    Official Full Name
    predicted gene 20616provided by MGI
    Primary source
    MGI:MGI:5313063
    See related
    Ensembl:ENSMUSG00000093628 AllianceGenome:MGI:5313063
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in testis adult (RPKM 4.2) and cerebellum adult (RPKM 0.2) See more
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    Genomic context

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    See Gm20616 in Genome Data Viewer
    Location:
    19 C1; 19 21.18 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (26598149..26600805, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (26620749..26623405, complement)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 34808 Neighboring gene predicted gene, 54047 Neighboring gene predicted gene, 52395 Neighboring gene STARR-seq mESC enhancer starr_45833 Neighboring gene STARR-positive B cell enhancer ABC_E1975 Neighboring gene STARR-seq mESC enhancer starr_45834 Neighboring gene SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2 Neighboring gene STARR-seq mESC enhancer starr_45835 Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:26720706-26720914 Neighboring gene RIKEN cDNA 4931403E22 gene Neighboring gene vaccinia related kinase 1 pseudogene Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:26919922-26920128 Neighboring gene predicted gene, 46648

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      26598149..26600805 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001782659.1 RNA Sequence

      Related
      ENSMUST00000177262.3
    Nucleotide Protein Strain
    Heading Accession and Version

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