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    RING/U-box protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819734, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RING/U-box protein
    Primary source
    TAIR:AT3G05670
    Locus tag
    AT3G05670
    See related
    Araport:AT3G05670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F18C1.6; F18C1_6
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (1653264..1657222)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene receptor like protein 32 Neighboring gene receptor like protein 33 Neighboring gene BTB/POZ domain-containing protein Neighboring gene ncRNA Neighboring gene embryo defective 2016

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A user-friendly platform for yeast two-hybrid library screening using next generation sequencing. Erffelinck ML, et al. PLoS One, 2018. PMID 30576311, Free PMC Article
    2. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
    3. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001337596.1
    NM_001337597.1
    NM_111440.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RING/U-box protein
    NP_187218.1
    • RING/U-box protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (TAIR:AT1G67180.1); Has 32410 Blast hits to 21304 proteins in 1066 species: Archae - 126; Bacteria - 4266; Metazoa - 11275; Fungi - 4969; Plants - 2419; Viruses - 550; Other Eukaryotes - 8805 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1653264..1657222
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111440.3 → NP_187218.1  RING/U-box protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187218.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VF53, A0A654F5T2, Q9M9X2
      Conserved Domains (2) summary
      cd16574
      Location:413 → 455
      RING-HC_Topors; RING finger, HC subclass, found in topoisomerase I-binding arginine/serine-rich protein (Topors) and similar proteins
      cl22851
      Location:506 → 549
      PHD_SF; PHD finger superfamily

    2. NM_001337596.1 → NP_001325507.1  RING/U-box protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VF53, A0A654F5T2, Q9M9X2
      Conserved Domains (2) summary
      cd16574
      Location:413 → 455
      RING-HC_Topors; RING finger, HC subclass, found in topoisomerase I-binding arginine/serine-rich protein (Topors) and similar proteins
      cl22851
      Location:506 → 549
      PHD_SF; PHD finger superfamily

    3. NM_001337597.1 → NP_001325508.1  RING/U-box protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VF53, A0A654F5T2, Q9M9X2
      Conserved Domains (2) summary
      cd16574
      Location:413 → 455
      RING-HC_Topors; RING finger, HC subclass, found in topoisomerase I-binding arginine/serine-rich protein (Topors) and similar proteins
      cl22851
      Location:506 → 549
      PHD_SF; PHD finger superfamily
    Nucleotide Protein
    Heading Accession and Version

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