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    NAC052 NAC domain containing protein 52 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820213, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NAC052
    Official Full Name
    NAC domain containing protein 52
    Primary source
    TAIR:AT3G10490
    Locus tag
    AT3G10490
    See related
    Araport:AT3G10490
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ANAC051; ANAC052; Arabidopsis NAC domain containing protein 51; NAC domain containing protein 52
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    Genomic context

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    See NAC052 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (3267825..3271202)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene NAC domain containing protein 50 Neighboring gene NAC domain containing protein 53 Neighboring gene Galactose oxidase/kelch repeat superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. sgs1: a neomorphic nac52 allele impairing post-transcriptional gene silencing through SGS3 downregulation. Butel N, et al. Plant J, 2017 May. PMID 28207953
    2. Arabidopsis mutants impaired in cosuppression. Elmayan T, et al. Plant Cell, 1998 Oct. PMID 9761800, Free PMC Article
    3. Type III effectors orchestrate a complex interplay between transcriptional networks to modify basal defence responses during pathogenesis and resistance. Truman W, et al. Plant J, 2006 Apr. PMID 16553893
    4. C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association. Zhang S, et al. Cell Discov, 2015. PMID 26617990, Free PMC Article
    5. Two novel NAC transcription factors regulate gene expression and flowering time by associating with the histone demethylase JMJ14. Ning YQ, et al. Nucleic Acids Res, 2015 Feb 18. PMID 25578968, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001337880.1
    NM_111884.2
    NM_180223.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in negative regulation of DNA-templated transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in negative regulation of gene expression, epigenetic IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in photoperiodism, flowering IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within post-transcriptional gene silencing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of gene silencing by regulatory ncRNA IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to molecule of bacterial origin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within ta-siRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within vegetative to reproductive phase transition of meristem IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleolus HDA PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    NAC domain containing protein 52
    NP_566375.1
    • Arabidopsis NAC domain containing protein 51 (ANAC051); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, pollen development; LOCATED IN: nucleolus; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 50 (TAIR:AT3G10480.1); Has 3001 Blast hits to 2994 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3001; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_850554.1
    • NAC domain containing protein 52 (NAC052); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, pollen development; LOCATED IN: nucleolus; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 50 (TAIR:AT3G10480.1); Has 3394 Blast hits to 3360 proteins in 132 species: Archae - 4; Bacteria - 13; Metazoa - 65; Fungi - 17; Plants - 3017; Viruses - 4; Other Eukaryotes - 274 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3267825..3271202
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337879.1 → NP_001327892.1  NAC domain containing protein 52 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VCG8, A0A1I9LTQ2, A0A384L736
      Conserved Domains (1) summary
      pfam02365
      Location:26 → 54
      NAM; No apical meristem (NAM) protein

    2. NM_180223.4 → NP_850554.1  NAC domain containing protein 52 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850554.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J3T0, Q9SQY0
      UniProtKB/TrEMBL
      A0A178VCW1, A0A5S9XAS6
      Conserved Domains (1) summary
      pfam02365
      Location:28 → 154
      NAM; No apical meristem (NAM) protein

    3. NM_111884.2 → NP_566375.1  NAC domain containing protein 52 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566375.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SQY0
      Conserved Domains (1) summary
      pfam02365
      Location:30 → 71
      NAM; No apical meristem (NAM) protein

    4. NM_001337880.1 → NP_001327893.1  NAC domain containing protein 52 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VCG8, A0A1I9LTQ2, A0A384L736
      Conserved Domains (1) summary
      pfam02365
      Location:26 → 54
      NAM; No apical meristem (NAM) protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SQY0.1

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