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    BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825315, updated on 18-Sep-2024

    Summary

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    Official Full Name
    BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)
    Primary source
    TAIR:AT3G61420
    Locus tag
    AT3G61420
    See related
    Araport:AT3G61420
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    20
    Sequence:
    Chromosome: 3; NC_003074.8 (22726708..22732152, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene U-box kinase family protein Neighboring gene SKP1-like 21 Neighboring gene plasma membrane intrinsic protein 1A Neighboring gene cysteine synthase C1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001340098.1
    NM_116007.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in nucleotide-excision repair IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of transcription factor TFIIH core complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)
    NP_191701.4
    • BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins); CONTAINS InterPro DOMAIN/s: Kelch related (InterPro:IPR013089), BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (TAIR:AT1G55750.1); Has 378 Blast hits to 374 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 158; Fungi - 125; Plants - 65; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22726708..22732152 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116007.5 → NP_191701.4  BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191701.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5BIV2, Q67Y79, Q9M322
      UniProtKB/TrEMBL
      A0A5S9XMR8
      Conserved Domains (2) summary
      smart00751
      Location:188 → 238
      BSD; domain in transcription factors and synapse-associated proteins
      cl17171
      Location:6 → 95
      PH-like; Pleckstrin homology-like domain

    2. NM_001340098.1 → NP_001326379.1  BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WFL3, A0A1I9LP36, A0A5S9WM83
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M322.2

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