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    TatD related DNase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821247, updated on 18-Sep-2024

    Summary

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    Official Full Name
    TatD related DNase
    Primary source
    TAIR:AT3G03500
    Locus tag
    AT3G03500
    See related
    Araport:AT3G03500
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T21P5.8; T21P5_8
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (832718..834600)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase Neighboring gene peroxin 19-1 Neighboring gene ncRNA Neighboring gene Phototropic-responsive NPH3 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_111221.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables hydrolase activity, acting on ester bonds IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TatD related DNase
    NP_187000.1
    • TatD related DNase; FUNCTIONS IN: endodeoxyribonuclease activity, producing 5'-phosphomonoesters, deoxyribonuclease activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Deoxyribonuclease, TatD Mg-dependent (InterPro:IPR012278), Deoxyribonuclease, TatD (InterPro:IPR015992), Deoxyribonuclease, TatD-related, conserved site (InterPro:IPR018228), Deoxyribonuclease, TatD-related (InterPro:IPR001130); BEST Arabidopsis thaliana protein match is: TatD related DNase (TAIR:AT5G17570.1); Has 10176 Blast hits to 10176 proteins in 2674 species: Archae - 185; Bacteria - 6995; Metazoa - 308; Fungi - 266; Plants - 100; Viruses - 0; Other Eukaryotes - 2322 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      832718..834600
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337472.1 → NP_001326581.1  TatD related DNase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LPQ4

    2. NM_001337473.1 → NP_001326582.1  TatD related DNase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LPQ5

    3. NM_111221.2 → NP_187000.1  TatD related DNase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187000.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VFU3, A0A654F3S1, Q9SRQ4
      Conserved Domains (1) summary
      pfam01026
      Location:4 → 262
      TatD_DNase; TatD related DNase
    Nucleotide Protein
    Heading Accession and Version

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