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    Legume lectin family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820768, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Legume lectin family protein
    Primary source
    TAIR:AT3G15356
    Locus tag
    AT3G15356
    See related
    Araport:AT3G15356
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (5174402..5175523, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein Neighboring gene SPA1-related 3 Neighboring gene uncharacterized protein Neighboring gene P53/DNA damage-regulated protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis AtLEC gene encoding a lectin-like protein is up-regulated by multiple stimuli including developmental signal, wounding, jasmonate, ethylene, and chitin elicitor. Lyou SH, et al. Mol Cells, 2009 Jan 31. PMID 19214436
    2. Proteomics of the response of Arabidopsis thaliana to infection with Alternaria brassicicola. Mukherjee AK, et al. J Proteomics, 2010 Feb 10. PMID 19857612
    3. Proteomics of loosely bound cell wall proteins of Arabidopsis thaliana cell suspension cultures: a critical analysis. Borderies G, et al. Electrophoresis, 2003 Oct. PMID 14595688
    4. Cell wall proteins in apoplastic fluids of Arabidopsis thaliana rosettes: identification by mass spectrometry and bioinformatics. Boudart G, et al. Proteomics, 2005 Jan. PMID 15593128
    5. Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study. Bindschedler LV, et al. Phytochemistry, 2008 Jul. PMID 18538804

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtLEC appears to play a role in the jasmonate-/ethylene-responsive, in addition to the chitin-elicited, defense responses. [AtLEC]
      Title: The Arabidopsis AtLEC gene encoding a lectin-like protein is up-regulated by multiple stimuli including developmental signal, wounding, jasmonate, ethylene, and chitin elicitor.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_148726.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in cellular response to chitin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in cellular response to ethylene stimulus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in cellular response to jasmonic acid stimulus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within defense response to fungus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in response to wounding IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apoplast HDA PubMed 
    located_in cytosol HDA PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall HDA PubMed 

    General protein information

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    Preferred Names
    Legume lectin family protein
    NP_683568.1
    • Legume lectin family protein; FUNCTIONS IN: carbohydrate binding, binding; INVOLVED IN: defense response to fungus, incompatible interaction; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 7 plant structures; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Lectin (InterPro:IPR016363); BEST Arabidopsis thaliana protein match is: Legume lectin family protein (TAIR:AT3G16530.1); Has 1875 Blast hits to 1854 proteins in 123 species: Archae - 0; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 1832; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5174402..5175523 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_148726.3 → NP_683568.1  Legume lectin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_683568.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q39205, Q8L715, Q9LJR2
      UniProtKB/TrEMBL
      A0A178VCY2, A0A5S9XCB9, A0A654F7E3
      Conserved Domains (1) summary
      cd06899
      Location:20 → 270
      lectin_legume_LecRK_Arcelin_ConA; legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LJR2.1

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