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    NTMC2T6.2 Calcium-dependent lipid-binding (CaLB domain) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820685, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NTMC2T6.2
    Official Full Name
    Calcium-dependent lipid-binding (CaLB domain) family protein
    Primary source
    TAIR:AT3G14590
    Locus tag
    AT3G14590
    See related
    Araport:AT3G14590
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    NTMC2TYPE6.2
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    Genomic context

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    See NTMC2T6.2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Sequence:
    Chromosome: 3; NC_003074.8 (4904270..4908067, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene glucan synthase-like 4 Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene Ribosomal protein L18ae family Neighboring gene Ribosomal protein L18ae/LX family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001125154.5
    NM_112319.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Calcium-dependent lipid-binding (CaLB domain) family protein
    NP_001118626.1
    • NTMC2T6.2; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G53590.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001189894.1
    • NTMC2T6.2; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G53590.1).
    NP_188077.3
    • NTMC2T6.2; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G53590.1); Has 4051 Blast hits to 3547 proteins in 247 species: Archae - 0; Bacteria - 2; Metazoa - 2246; Fungi - 503; Plants - 944; Viruses - 0; Other Eukaryotes - 356 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4904270..4908067 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001202965.1 → NP_001189894.1  Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189894.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VER6, F4IW75
      Conserved Domains (2) summary
      pfam17047
      Location:37 → 230
      SMP_LBD; Synaptotagmin-like mitochondrial-lipid-binding domain
      cl14603
      Location:256 → 367
      C2; C2 domain

    2. NM_001338125.1 → NP_001326569.1  Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LPP2, Q9LUD5

    3. NM_001338126.1 → NP_001326568.1  Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LPP1, Q9LUD5

    4. NM_001125154.5 → NP_001118626.1  Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118626.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VER6, B3H4I1
      Conserved Domains (2) summary
      pfam17047
      Location:68 → 261
      SMP_LBD; Synaptotagmin-like mitochondrial-lipid-binding domain
      cl14603
      Location:287 → 398
      C2; C2 domain

    5. NM_112319.4 → NP_188077.3  Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188077.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q67XP8, Q9LUD5
      Conserved Domains (2) summary
      pfam17047
      Location:23 → 216
      SMP_LBD; Synaptotagmin-like mitochondrial-lipid-binding domain
      cl14603
      Location:242 → 353
      C2; C2 domain
    Nucleotide Protein
    Heading Accession and Version

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