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    SR34a SER/ARG-rich protein 34A [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824105, updated on 8-Dec-2024

    Summary

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    Official Symbol
    SR34a
    Official Full Name
    SER/ARG-rich protein 34A
    Primary source
    TAIR:AT3G49430
    Locus tag
    AT3G49430
    See related
    Araport:AT3G49430
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    At-SR34a; SER/ARG-rich protein 34A; Serine/Arginine-Rich Protein Splicing Factor 34a; SRp34a
    Summary
    Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.
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    Genomic context

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    See SR34a in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    13
    Sequence:
    Chromosome: 3; NC_003074.8 (18331509..18335154)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene Transcription factor IIIC, subunit 5 Neighboring gene Got1/Sft2-like vescicle transport protein family Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene F-box and associated interaction domains-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phosphothreonine 218 is required for the function of SR45.1 in regulating flower petal development in Arabidopsis. Zhang XN, et al. Plant Signal Behav, 2014. PMID 25763493, Free PMC Article
    2. Phosphoproteomics reveals extensive in vivo phosphorylation of Arabidopsis proteins involved in RNA metabolism. de la Fuente van Bentem S, et al. Nucleic Acids Res, 2006. PMID 16807317, Free PMC Article
    3. Profiling of the Receptor for Activated C Kinase 1a (RACK1a) interaction network in Arabidopsis thaliana. Guo J, et al. Biochem Biophys Res Commun, 2019 Dec 3. PMID 31606202
    4. Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Pendle AF, et al. Mol Biol Cell, 2005 Jan. PMID 15496452, Free PMC Article
    5. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001084795.1
    NM_001203112.1
    NM_001339420.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within RNA splicing NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SER/ARG-rich protein 34A
    NP_001078264.1
    • SER/ARG-rich protein 34A (SRp34a); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA splicing; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G02840.2); Has 61 Blast hits to 44 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
    NP_001190041.1
    • SER/ARG-rich protein 34A (SRp34a); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA splicing; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G02840.2).
    NP_190512.3
    • SER/ARG-rich protein 34A (SRp34a); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA splicing; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G02840.2); Has 322 Blast hits to 306 proteins in 73 species: Archae - 0; Bacteria - 9; Metazoa - 1; Fungi - 75; Plants - 216; Viruses - 3; Other Eukaryotes - 18 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18331509..18335154
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339417.1 → NP_001325875.1  SER/ARG-rich protein 34A [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LMJ8, A2RVS6, A8MR30, Q9CA06, Q9SCL3
      UniProtKB/TrEMBL
      A0A178VIL8, A0A5S9XJJ5, A0A654FE92
      Conserved Domains (2) summary
      cd12602
      Location:122 → 197
      RRM2_SF2_plant_like; RNA recognition motif 2 (RRM2) found in plant pre-mRNA-splicing factor SF2 and similar proteins
      cl17169
      Location:9 → 79
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. NM_001339418.1 → NP_001325874.1  SER/ARG-rich protein 34A [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LMJ8, A2RVS6, A8MR30, Q9CA06, Q9SCL3
      UniProtKB/TrEMBL
      A0A178VIL8, A0A5S9XJJ5, A0A654FE92
      Conserved Domains (2) summary
      cd12602
      Location:122 → 197
      RRM2_SF2_plant_like; RNA recognition motif 2 (RRM2) found in plant pre-mRNA-splicing factor SF2 and similar proteins
      cl17169
      Location:9 → 79
      RRM_SF; RNA recognition motif (RRM) superfamily

    3. NM_001339419.1 → NP_001325876.1  SER/ARG-rich protein 34A [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LMJ8, A2RVS6, A8MR30, Q9CA06, Q9SCL3
      UniProtKB/TrEMBL
      A0A178VIL8, A0A5S9XJJ5, A0A654FE92
      Conserved Domains (2) summary
      cd12602
      Location:122 → 197
      RRM2_SF2_plant_like; RNA recognition motif 2 (RRM2) found in plant pre-mRNA-splicing factor SF2 and similar proteins
      cl17169
      Location:9 → 79
      RRM_SF; RNA recognition motif (RRM) superfamily

    4. NM_114803.6 → NP_190512.3  SER/ARG-rich protein 34A [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190512.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LMJ8, A2RVS6, A8MR30, Q9CA06, Q9SCL3
      UniProtKB/TrEMBL
      A0A178VIL8, A0A5S9XJJ5, A0A654FE92
      Conserved Domains (2) summary
      cd12602
      Location:122 → 197
      RRM2_SF2_plant_like; RNA recognition motif 2 (RRM2) found in plant pre-mRNA-splicing factor SF2 and similar proteins
      cl17169
      Location:9 → 79
      RRM_SF; RNA recognition motif (RRM) superfamily

    5. NM_001203112.1 → NP_001190041.1  SER/ARG-rich protein 34A [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190041.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LMJ8, A2RVS6, A8MR30, Q9CA06, Q9SCL3
      UniProtKB/TrEMBL
      A0A178VIL8, A0A5S9XJJ5, A0A654FE92
      Conserved Domains (2) summary
      cd12602
      Location:122 → 197
      RRM2_SF2_plant_like; RNA recognition motif 2 (RRM2) found in plant pre-mRNA-splicing factor SF2 and similar proteins
      cl17169
      Location:9 → 79
      RRM_SF; RNA recognition motif (RRM) superfamily

    6. NM_001339420.1 → NP_001325877.1  SER/ARG-rich protein 34A [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LMJ8, A2RVS6, A8MR30, Q9CA06, Q9SCL3
      UniProtKB/TrEMBL
      A0A178VIL8, A0A5S9XJJ5, A0A654FE92
      Conserved Domains (2) summary
      cd12602
      Location:122 → 197
      RRM2_SF2_plant_like; RNA recognition motif 2 (RRM2) found in plant pre-mRNA-splicing factor SF2 and similar proteins
      cl17169
      Location:9 → 79
      RRM_SF; RNA recognition motif (RRM) superfamily

    7. NM_001084795.1 → NP_001078264.1  SER/ARG-rich protein 34A [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078264.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VIL8
      Conserved Domains (3) summary
      COG0724
      Location:1 → 80
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12599
      Location:9 → 79
      RRM1_SF2_plant_like; RNA recognition motif 1 in plant pre-mRNA-splicing factor SF2 and similar proteins
      cd12602
      Location:122 → 197
      RRM2_SF2_plant_like; RNA recognition motif 2 in plant pre-mRNA-splicing factor SF2 and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A2RVS6.1

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