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    MEF20 mitochondrial editing factor 20 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821430, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MEF20
    Official Full Name
    mitochondrial editing factor 20
    Primary source
    TAIR:AT3G18970
    Locus tag
    AT3G18970
    See related
    Araport:AT3G18970
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    mitochondrial editing factor 20; mitochondrial editing factor 20
    Summary
    Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing.
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    Genomic context

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    See MEF20 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (6543318..6545432, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene tRNA-Tyr Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene AP2/B3-like transcriptional factor family protein Neighboring gene EIN2 targeting protein1 Neighboring gene AP2/B3-like transcriptional factor family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Reverse genetic screening identifies five E-class PPR proteins involved in RNA editing in mitochondria of Arabidopsis thaliana. Takenaka M, et al. J Biol Chem, 2010 Aug 27. PMID 20566637, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_112783.2

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within mitochondrial mRNA modification IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    mitochondrial editing factor 20
    NP_188527.2
    • mitochondrial editing factor 20 (MEF20); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G59200.1); Has 30354 Blast hits to 12990 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 18; Plants - 30011; Viruses - 0; Other Eukaryotes - 317 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6543318..6545432 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112783.2 → NP_188527.2  mitochondrial editing factor 20 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188527.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LJ69
      UniProtKB/TrEMBL
      A0A178VB66, A0A5S9XDI9, A0A654F8J7
      Conserved Domains (2) summary
      PLN03077
      Location:127 → 472
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:290 → 317
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LJ69.1

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